Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02024 ATGGTTTCCCCGGAAAACAGCAATTGGCTGTTCGATTACCCGCTGATCGACGACGTTATTCCCGTCGGCGACGCCTCCTTTTCCGTCTCCGCCTCCGCCTTCTCCTGGCCCCCACCTCCCGCCAATGTCAGTGTTGAAATTGATGCTTCGCTTGGGGATTCTGATGGCCCCAAAGATACTGCTTTGAAGAAAAGGGCTAGATGTGATTCAAGTACTGCTTCTAGCTCTAAAGCGTGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAATTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTGATTGATGCTGCCCGAATGGTAACACAGCTGCGGGATGAAGCCCTGAAGTTGAAAGACTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGACGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGATGCAGGTAAAATCAATGAATGCTCAACCTGCTTTCTTGCCACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAGTTGATGCCTTTCATCAGGTACCCGGGAGTTGCCATGTGGCAATTTATGCCTCCGGCCACCATGGATACCTCCCAGGATCATGTTCTCCGTCCACCAGTTGCCTAA 702 0.5071 MVSPENSNWLFDYPLIDDVIPVGDASFSVSASAFSWPPPPANVSVEIDASLGDSDGPKDTALKKRARCDSSTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAARMVTQLRDEALKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEMQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLMPFIRYPGVAMWQFMPPATMDTSQDHVLRPPVA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02024 233 PANTHER BHLH TRANSCRIPTION FACTOR 1 233 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gma12g02024 233 CDD bZIP 138 170 - -
Gma12g02024 233 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 233 - -
Gma12g02024 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983
Gma12g02024 233 SMART finulus 78 129 IPR011598 GO:0046983
Gma12g02024 233 MobiDBLite consensus disorder prediction 46 80 - -
Gma12g02024 233 CDD bHLH_AtILR3_like 77 152 - -
Gma12g02024 233 Gene3D - 63 121 IPR036638 GO:0046983
Gma12g02024 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 147 IPR036638 GO:0046983
Gma12g02024 233 Coils Coil 120 175 - -
Gma12g02024 233 Pfam Helix-loop-helix DNA-binding domain 76 123 IPR011598 GO:0046983
Gma12g02024 233 Gene3D arf6 gtpase in complex with a specific effector, jip4 122 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02024 Gma-Chr12 40896762 40898656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02024 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.333 3.22e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g02024 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02024 - - gmx:100813088 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02024 12 40896762 40898656 Gma12g02024 12 40896762 40898656 ECH
Gma13g02533 13 40207583 40210186 Gma12g02024 12 40896762 40898656 GST
Gma12g02024 12 40896762 40898656 Gma12g01230 12 16211401 16214776 PCT
Gma12g02024 12 40896762 40898656 Gma06g02458 06 46923207 46927656 PCT
Gma12g01230 12 16211401 16214776 Gma12g02024 12 40896762 40898656 PCT
Gma06g02458 06 46923207 46927656 Gma12g02024 12 40896762 40898656 PCT