Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02006 ATGCAACGAGCGAGTGACCTTATTTTTGGGTTCTCAATATTTGCTGAGCCAATGAAAACCGAAATCATCGAGCATGCGCGTTTAGCTATGGATGAGTTGGTAAAGTTAGGCACTGCAGGGCATCCTTTATGGCAGCCGCAACCAAAGGATAGATTTGACATTTTAAATCAAATTGAATATTTGAGGCAATTTGGTGAGGTTGATACAGCGCTAAGGGAGATTGTTAAGTTGATTGAGGTTGGAGAGCCTCAAAATTTACCAAGCTTTGACACATATCAAACCGAGCAGCCAGCATCAAAGGAAACTCCGACAGTAGCTCTACAAACTGAAGCTTCACGAGATATGGCGTTTATTAACATGTCGCCAATCAGCATTGTTGAATTGCTGATGGATGTAAATGAATGGTCGAGTGCCTTTTACAACATTGTCTCAAAAGCAACACTTGTAGGAACTTTGTTAGGAGGGGAGAGAGGCTATGATGACAAATTGCACGTGatgagcgctgaaattcatttacctactactactgtaccgactagggagtgttattttggaaggttcagcaagcagttgtctcataacgtatggggagtcgtcgatatatcattggagaagtttattccttccccaacgagtaatttcttaaaaagaccatcgggatgtttaattagtggaatgcctaatggacattccaaggttGTTGCATGGGTTGAGCATGtagaagcagaccatagtcatttggacaattatttcaagcctctagtcacctccactctagcttttggtgcaagccgttggcttaattccttaaatcgatatggtgaatggttacaaactctaaaagcaacaacatttgttgcagatgaaggagTTCTTATACCCCAAACTGGGAGGACAAATTTCTTGAAACTGGCGGATAGAATGATCAAAACCTTTTGTGCAAATGTCAGTGCTACCGCAGGCAATCCATGGATGAAAATAACTACATttcttggtgatacagatgtgaaagtcatggtcaagaataatataaaagatactgcaatgcctcctggtacatccgtggttttcactacttctctttggctagaagtctccccaaatcgattgttcaacttcctacgtcatgagaattccagaaccaagTGGGATATGCTTTCACGTACACTTGTTATTAGAGAAATCGCGTCATTGCTTAAAGGAGAAAATCCAGGGAATTGTGTTTCCTTAATGCGTGCAAATACCTCAAAGGGCAAGCTTGAGATCTTTTATCTGCAAGAGAGTTACACAGACTCAACAGGTTCCTATGTGGTATATGCTCCACTAGACGAGTCAGCTCTCACAGCTATTGTAAAGGGATCAAACCCTGACAAAGTGATGATTCTGCCATCAGGGTTTAGTATACTTCCCGGAAGGTTGCAAGGAGATGAAGATAGAGGCACTGGAAGTCTTCTAACTGTTGCATTCCATGTAGTTGAAAGTGCCACAAATAAGCCATATATCCCTCCTGAATCAATCCAAATCATACACAAAGTCATTACAGATACCGTTACCTCTATAAAGGACATTGTGCTGTATCATAATCATCGCAACAATTGGATGGAGGATCGAGATTTTCTAGTCAGATCCTAA 1632 0.2843 MQRASDLIFGFSIFAEPMKTEIIEHARLAMDELVKLGTAGHPLWQPQPKDRFDILNQIEYLRQFGEVDTALREIVKLIEVGEPQNLPSFDTYQTEQPASKETPTVALQTEASRDMAFINMSPISIVELLMDVNEWSSAFYNIVSKATLVGTLLGGERGYDDKLHVMSAEIHLPTTTVPTRECYFGRFSKQLSHNVWGVVDISLEKFIPSPTSNFLKRPSGCLISGMPNGHSKVVAWVEHVEADHSHLDNYFKPLVTSTLAFGASRWLNSLNRYGEWLQTLKATTFVADEGVLIPQTGRTNFLKLADRMIKTFCANVSATAGNPWMKITTFLGDTDVKVMVKNNIKDTAMPPGTSVVFTTSLWLEVSPNRLFNFLRHENSRTKWDMLSRTLVIREIASLLKGENPGNCVSLMRANTSKGKLEIFYLQESYTDSTGSYVVYAPLDESALTAIVKGSNPDKVMILPSGFSILPGRLQGDEDRGTGSLLTVAFHVVESATNKPYIPPESIQIIHKVITDTVTSIKDIVLYHNHRNNWMEDRDFLVRS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02006 543 ProSiteProfiles START domain profile. 15 279 IPR002913 GO:0008289
Gma12g02006 543 SMART START_1 65 276 IPR002913 GO:0008289
Gma12g02006 543 SUPERFAMILY Bet v1-like 297 504 - -
Gma12g02006 543 SUPERFAMILY Bet v1-like 22 275 - -
Gma12g02006 543 Pfam START domain 90 275 IPR002913 GO:0008289
Gma12g02006 543 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN ROC2 2 527 - -
Gma12g02006 543 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 527 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02006 Gma-Chr12 40648552 40660751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02006 1 524 Homeobox Transcription Factor Family AT4G04890 39.372 7.13e-122 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02006 K09338 - gmx:102662817 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02006 12 40648552 40660751 Gma13g02553 13 40418599 40422716 ECH
Gma12g02006 12 40648552 40660751 Gma12g02006 12 40648552 40660751 ECH