Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02003 ATGATGAAAAACGTATCATGGTTTTGGACCCGGTTTGGCCGTGGATCATCCTCCAATTTCAGCACAGTAAGTATAGCATCCAGTTCTTCCAATGACTCCGTCGACAGTAGCATCCAAAACCAAAACTACAGAtacgatgtatttatcagtttcagaggtcctgacacccgcaacactttcgttgatcatctttatgcccatctcctccgaaagggtattttcgtctttaaggatgacaaaaagctccagaaaggagaatccatatcagcacagcttctacaagcaattcaagattcacgcctttcaatcattgtcttttccaaacaatacgcttcctccacatggtgtttagacgaaatggccgctatagctgattgcaaacaacaatcaaaccaaactgtgttccctgttttctatgatgtagatccatctcatgtaagacatcagaacggggcatacgaggttgcctttgtttcacacagatcgagattcagagaagatccagacaaggttgatcgatgggcgagagctatgacagatctggccaattcagctggttgggatgtcatgaacaaGCCCGAGTTTAGAGAGATTGAAAATATTGTTCAAGAGGTGATAAAAACATTGGGTCATAAATTCTCTGGGTTTGTTGATGACCTCATTGGGATACAATCACGTGTACAAGAATTAGAAGGTAGTTTAAAATTAAGTTCAAATAATGATAATGTTCGAGTTTTAGGAATTTGCGGGATGGGTGGAATAGGAAAGACAACTCAGGCTGTTGTCTTGTATGATAGAATATCTTACAAGTTTGACGCTTGTTGTTTCGTTGAGAATGTAAACAAAATTTACAGGGATGGAGGTGCAACTGCTATACAAAAGCAAATAGTTCGTCAAACTTTAGACGAGAAAAATCTAGAAATATATAGTCCTTTTGAAATATCAGGAATAGTAAGAAATAGGCTACACAACATAAAAGTCCTCATATTTCTTGACAATGTTGACCAAATAGAGCAATTGCAGGAATTGGCCATAAACCCTAATTTTCTTTTTGAAgggagtagaatgattattatcactagggatgagcatattctaaaagtgtatggagcacatgtaatacacaaggtttcattaatgaatgataatgatgctcgcaagctgttttattcaaaagctttcaaaagtgaagaccaaagtagtagttgtgtagagttgattcctgaggtactcaaatatgtccagtgtcttccattagcaattaaagtaataggttctttcttgtgtactcgaaatgctacccaatggaaagatgctttggatagatttcagaatagtccagataatggaatcatggatgtacttcaaataagtattgatggactacaatatgaagaaaaagaaatatttttacacattgcttgtttctttaaagaagagatggaggattatgctaagcgaattctgaactgtTGTGGATTACACACTCACATTGGAATCCCAAGACTCATTGAGAAATCACTCATAACACTTAGAGATCAAGAAATTCATATGCATGATATGTTGCAAGAATTGGGAAAGAAAATTGTTCGCAATCAATTTCCTGAACAACCAGGATCATGGAGTAGAATATGGCTTTATGAAGATTTCTTTCGTGTCATGACAACCCAAACGGGAACAAATAATGTCACAGCCGTAGTTCTAAATAAAAAAGATCAAGATATGTCCGAATGTAGCGTTGCTGAACTATCAAAAATGAAGAACCTTAGGTTACTTATATTATATCAAAAAAGTTTTTCAGGAAGCCTCGATTTTCTCTCCACCCAGCTGCGATATCTTTTGTGGCATGATTATCCTTTTACTTCTTTGCCATCATGTTTTGCGGCCTTTGATCTTGAGGAATTGAATATGCCTAGTAGTAGCATCAATTGTTTATGGGAAGGCCGCAAGAATTTTCCATGTCTGAAAAGGATGGATTTGAGCAACTCCAAATTTCTTGTAGAGACTCCAGATTTTTCTGGGGCCCCATACCTTGAGCGGTTGGATCTTTCAGGATGCACAGATTTAACATTTGTCCATCCATCAATGGGACGTCTTGAAAACCTTGTTTTCTTGAGTTTCAGAAATTGTAACAATCTAATAAGCATCAAAATTGGCCGTGGTTTTAATCTAATTTCTTTGAGAGTTCTACATTTCTCTGGTTGCACTAAACTTGAAAACACCCCAGATTTTACAAGGACAACAAATCTTGAGTACCTTGACTTTGATGGATGTACAAGTTTATCCTCGGTACATGAATCTATTGGAGCTCTTGCAAAACTTACATTCTTGAGTTTTAGAGACTGCAAAAATCTTGTTAGTATACCTAACAACATGAATACCATGACATCTCTTCAAACCCTAGATTTATGGGGATGCTTGGAACTTATGGATTTGCCCTTAGGACGAGCTTTCAGTCCTTCATCCCATTTGAAATCTTTGGTTTTTCTGGATATGGGCTTTTGCAATCTAGTTAAAGTACCTGATGCTATTGGAGAGTTAAGGTGTTTAGAAAGACTGAATCTTCAAGGAAACAATTTTGTTTCAATACCTTATGATTCCTTCTGTGGGCTACATTGTCTAGCGTATTTAAACTTGTCTCATTGCCATAAGCTTGAAGCTTTGCCCGACCTTCCATCAGAAAGGGCTTCATTAGGGGGATGGTATTTTAAAACGGTATCTGGATCTCGTGACCATACGTCAGGGTTATATGTTTTTGATTGTCCCAAGCTGGCTCATATGTTGGTGTCGCCAAGCAGAGACTTAGAACTTGCATGGTTAGTGAGACTGATTAAGGAACCTTGTAATTTTCGGTGTGGCTTTGACATTGTTGTTCCTTTGGGTTTGGAAGTTATTCTTCCTCGGTGGTTATTAAACCAAGGGTTTAAAGGGGATTCAGTTATACGGATAATGCAGTTTAATGTGGATGACAACTGGATTGGTTTTGTCTTTTGTGTTACATTTGAGCGGAACATTATTCGTCCTGCGGTTTCTAGTAGTTCTCCACATTGTTCATTTTCTTCGTCACATCCGTTTCGTCTTTCTTTTGAAAGTGAATACACAGAAGAATACTTTGACATGCCACTTAATTTGGAGTTGAACAAGATTTATGGATCAAAACATCTTTGGGTCATTTATATCTCTCGAGAACACTGCCATTTTGTGAAAACAGGGGCTCATATCACATTTAAAGCCCACTCAAGTGTTAAGATCAATGCATGGGGCATGAAGAGTATATTCAGGCAAGATATAGATGACCTTGAAAGGATGCAACAAGGAGAATCTCTTCCACTCCATCCTAATGATGTAGTACACCATGTTGACTTTGATAGTGTAGAAAAAAGTAACAACAACTCTGGGCCTAAATTCCAGCTTCCTTACAATTGGTTGGTTACAAAGGAAGATGAAGTTGAGAATATGAACACAAAGGCAAAAGAAACTAATCTCTCTAATGCGGGGTTGTCAGACGACACAAGGTAA 3519 0.2856 MMKNVSWFWTRFGRGSSSNFSTVSIASSSSNDSVDSSIQNQNYRYDVFISFRGPDTRNTFVDHLYAHLLRKGIFVFKDDKKLQKGESISAQLLQAIQDSRLSIIVFSKQYASSTWCLDEMAAIADCKQQSNQTVFPVFYDVDPSHVRHQNGAYEVAFVSHRSRFREDPDKVDRWARAMTDLANSAGWDVMNKPEFREIENIVQEVIKTLGHKFSGFVDDLIGIQSRVQELEGSLKLSSNNDNVRVLGICGMGGIGKTTQAVVLYDRISYKFDACCFVENVNKIYRDGGATAIQKQIVRQTLDEKNLEIYSPFEISGIVRNRLHNIKVLIFLDNVDQIEQLQELAINPNFLFEGSRMIIITRDEHILKVYGAHVIHKVSLMNDNDARKLFYSKAFKSEDQSSSCVELIPEVLKYVQCLPLAIKVIGSFLCTRNATQWKDALDRFQNSPDNGIMDVLQISIDGLQYEEKEIFLHIACFFKEEMEDYAKRILNCCGLHTHIGIPRLIEKSLITLRDQEIHMHDMLQELGKKIVRNQFPEQPGSWSRIWLYEDFFRVMTTQTGTNNVTAVVLNKKDQDMSECSVAELSKMKNLRLLILYQKSFSGSLDFLSTQLRYLLWHDYPFTSLPSCFAAFDLEELNMPSSSINCLWEGRKNFPCLKRMDLSNSKFLVETPDFSGAPYLERLDLSGCTDLTFVHPSMGRLENLVFLSFRNCNNLISIKIGRGFNLISLRVLHFSGCTKLENTPDFTRTTNLEYLDFDGCTSLSSVHESIGALAKLTFLSFRDCKNLVSIPNNMNTMTSLQTLDLWGCLELMDLPLGRAFSPSSHLKSLVFLDMGFCNLVKVPDAIGELRCLERLNLQGNNFVSIPYDSFCGLHCLAYLNLSHCHKLEALPDLPSERASLGGWYFKTVSGSRDHTSGLYVFDCPKLAHMLVSPSRDLELAWLVRLIKEPCNFRCGFDIVVPLGLEVILPRWLLNQGFKGDSVIRIMQFNVDDNWIGFVFCVTFERNIIRPAVSSSSPHCSFSSSHPFRLSFESEYTEEYFDMPLNLELNKIYGSKHLWVIYISREHCHFVKTGAHITFKAHSSVKINAWGMKSIFRQDIDDLERMQQGESLPLHPNDVVHHVDFDSVEKSNNNSGPKFQLPYNWLVTKEDEVENMNTKAKETNLSNAGLSDDTR 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02003 1172 SUPERFAMILY L domain-like 518 890 - -
Gma12g02003 1172 ProSiteProfiles Leucine-rich repeat profile. 849 870 IPR001611 GO:0005515
Gma12g02003 1172 Pfam NB-ARC domain 235 447 IPR002182 GO:0043531
Gma12g02003 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 473 IPR027417 -
Gma12g02003 1172 Gene3D - 39 214 IPR035897 -
Gma12g02003 1172 Gene3D Ribonuclease Inhibitor 536 718 IPR032675 -
Gma12g02003 1172 MobiDBLite consensus disorder prediction 1156 1172 - -
Gma12g02003 1172 Gene3D - 215 374 IPR027417 -
Gma12g02003 1172 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 41 656 - -
Gma12g02003 1172 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 663 890 - -
Gma12g02003 1172 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 663 890 IPR044974 GO:0006952
Gma12g02003 1172 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 656 IPR044974 GO:0006952
Gma12g02003 1172 MobiDBLite consensus disorder prediction 1153 1172 - -
Gma12g02003 1172 Pfam TIR domain 45 211 IPR000157 GO:0007165
Gma12g02003 1172 SMART till_3 44 184 IPR000157 GO:0007165
Gma12g02003 1172 Gene3D - 380 467 IPR042197 -
Gma12g02003 1172 ProSiteProfiles TIR domain profile. 43 209 IPR000157 GO:0007165
Gma12g02003 1172 PRINTS Disease resistance protein signature 245 260 - -
Gma12g02003 1172 PRINTS Disease resistance protein signature 321 335 - -
Gma12g02003 1172 PRINTS Disease resistance protein signature 414 428 - -
Gma12g02003 1172 PRINTS Disease resistance protein signature 793 809 - -
Gma12g02003 1172 Pfam Leucine rich repeat 830 883 IPR001611 GO:0005515
Gma12g02003 1172 Gene3D Ribonuclease Inhibitor 818 932 IPR032675 -
Gma12g02003 1172 Gene3D Ribonuclease Inhibitor 722 817 IPR032675 -
Gma12g02003 1172 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 187 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02003 Gma-Chr12 40625844 40631827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02003 723 890 WRKY Transcription Factor Family AT4G12020 35.714 7.65e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02003 - - var:108332841 1630.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02003 12 40625844 40631827 Gma12g02003 12 40625844 40631827 ECH