Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01988 ATGGACTCCATCGCCGGAGCTCCACCCCACGCCGACGTCACCCCTCCGCCGCCGCGCCCGTCGCCGTTCCCCGGCCGGGAAGACTGCTGGTCGGAGGAGGCCACGTTCACCCTCATCGAAGCGTGGGGCCAGCGCCACCTCGAACTCAACCGCGGCAACCTCCGCCAGCGCCACTGGCAGGAGGTCGCCGACGCCGTCAACGCCCTCCACGGCCACGTCAGCGCCAAGGCCCGCCGCACCGACGTCCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGATTCCGGCGACTCCGCCACCACCTGGCCCTTCTTCCGCCGCCTCGATTTCCTCATCGGCGACAATTTCCCCGCCAAAAAGCCCTCCCCTCCGCCGCCGTCCTCCGCCGGAGTAACCCGTCGGAGCACCCCCCCGGCCAAGTCCCCGCTGTGGCCCGTCATTCCCGTCGGCCCTCGATCCGGCACCAAGAAGCGGCCGGCGCAGGCGAAGCCGGCGTCGGCCTCGCCAGATAGTGTCGCCGACTCGTACTTCCGCCGGAATTTCTCGGTGTTCGCCGCCGCCGCGGCGGCGGCGGCGGCGGAGGCCGACAGCGAGAATTCGGATGGGTCAAAATGGAGCAGTGGGAGTGAGAAAGGGACGATGAAGAAGAAAAGAGGAAGAGGAGATTGGGAATTTGGGTACAGAGAGATGGCAGAGGCGTTGGAGAGGTTTGGGGAGATTTATGAGAGAGTGGAAGAAGCGAAACAGAGGCAAATGGTGGAGTTGGAGAAACAGAGGATGCAGTTCGCCAAGGATTTGGAAACCCAGAGAATGAAACTCTTCATGGAAACGCAGGTTCACTTGCAGAAAATCAACCGCTCCAAACGTTCTTCTGCTTCTGACAATGTTTCGTAG 924 0.6245 MDSIAGAPPHADVTPPPPRPSPFPGREDCWSEEATFTLIEAWGQRHLELNRGNLRQRHWQEVADAVNALHGHVSAKARRTDVQCKNRIDTLKKKYKIEKARVSDSGDSATTWPFFRRLDFLIGDNFPAKKPSPPPPSSAGVTRRSTPPAKSPLWPVIPVGPRSGTKKRPAQAKPASASPDSVADSYFRRNFSVFAAAAAAAAAEADSENSDGSKWSSGSEKGTMKKKRGRGDWEFGYREMAEALERFGEIYERVEEAKQRQMVELEKQRMQFAKDLETQRMKLFMETQVHLQKINRSKRSSASDNVS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01988 307 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 3 304 IPR044823 -
Gma12g01988 307 Coils Coil 240 271 - -
Gma12g01988 307 MobiDBLite consensus disorder prediction 203 229 - -
Gma12g01988 307 Gene3D - 30 97 - -
Gma12g01988 307 MobiDBLite consensus disorder prediction 1 27 - -
Gma12g01988 307 Pfam Myb/SANT-like DNA-binding domain 27 120 IPR044822 -
Gma12g01988 307 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 3 304 - -
Gma12g01988 307 MobiDBLite consensus disorder prediction 126 181 - -
Gma12g01988 307 MobiDBLite consensus disorder prediction 10 24 - -
Gma12g01988 307 SMART 118neu2 37 128 IPR006578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01988 Gma-Chr12 40463576 40468472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01988 223 294 Trihelix Transcription Factor Family AT3G14180 46.575 3.43e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma12g01988 Myb_DNA-bind_4 1.3e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01988 - - gmx:100784918 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01988 12 40463576 40468472 Gma12g01988 12 40463576 40468472 ECH
Gma13g02571 13 40560693 40565056 Gma12g01988 12 40463576 40468472 GST