Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01979 ATGGAAATGGAAGCCTTTGCCCCACATAGGATTAGTGATGGTTTTCAAGTGAGTTGTGGTGTAATTGGAAATGGGTATGGTTCATCTTCGTCTCTAGTGTTGGATAAGGAGAAGGGAGAGCTTGTGGAGGCCCCTGTCAAATTGGAACGCAAGGGTGTTTCTCCTGAGAGAAGCATTGAAGCCTTGAAGAACCATAGTGAGGCAGAGAGGAGAAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCTCTGTCATTCCAGGTGCTAAGAAGTTGGACAAAGCAACCTTGCTGGGTGAGGTTATTAGACATTTGAAAGATCTGAAAACAAATGCAGCACAAGCTAGTGAAGGCCTAATGATACCAAAGGACAGTGATGAAATAAGAATTGAAGAACAGGAGGGAGGATTGAATGGCTTCCCTTACTCAATCAGGGCATCACTATGCTGTGAATACAAACCCGGGTTATTAACTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCTGAGATTGCAACCTTGGGAGGAAGGATGAAGAATGTGTTTGTGATAATTAACTGCAAAGAACAAAATGTTGAAGATGCTGAGTACCGCCAGTTTCTGGCAGGGTCTGTTCATCAAGCTCTAAGATCTGTGTTGGATAGATTTTCTGTTTCACAGGACATTCCATACCCATCTAACCGTTCGATCCCAAAGCTTTACGAATCAGACGGTGGCCATTGTTCCGATGCAGAACCGTTTCGGTGCAGCGTCATCTCCTTCCTGAGAACGAACCAGGAAAGTTCTTCCTAA 810 0.437 MEMEAFAPHRISDGFQVSCGVIGNGYGSSSSLVLDKEKGELVEAPVKLERKGVSPERSIEALKNHSEAERRRRARINAHLDTLRSVIPGAKKLDKATLLGEVIRHLKDLKTNAAQASEGLMIPKDSDEIRIEEQEGGLNGFPYSIRASLCCEYKPGLLTDIRQALDALHLMIIRAEIATLGGRMKNVFVIINCKEQNVEDAEYRQFLAGSVHQALRSVLDRFSVSQDIPYPSNRSIPKLYESDGGHCSDAEPFRCSVISFLRTNQESSS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01979 269 PANTHER TRANSCRIPTION FACTOR BHLH30 1 234 IPR045847 GO:0003700|GO:0006355
Gma12g01979 269 SMART finulus 66 115 IPR011598 GO:0046983
Gma12g01979 269 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Gma12g01979 269 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 234 - -
Gma12g01979 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Gma12g01979 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 115 IPR036638 GO:0046983
Gma12g01979 269 Gene3D - 56 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01979 Gma-Chr12 40368430 40372315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01979 47 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.437 2.31e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g01979 HLH 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01979 - - gmx:100783322 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01979 12 40368430 40372315 Gma12g01979 12 40368430 40372315 ECH