Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01966 ATGGATTACTTCGACCATGATCATGATCATGACCCATTCCACGACCACGACGACTTCAACAGAAGGATACTCATCATGGCCATAGTTTCCTTATCAGTGGTCTTGGTTCTTGTCTTTGCACTTCACCTCTACGCAAGGGTTTTCCTCCGCCGCCAAACTCGCCGCAGAGCCGCCATATACCAACTGAGCCTCAACGTGGCACAAGCACACGCCGAGCCACACAACAACACAGGGCTGAACCCTGCCCTCATCACCACCCTTCCCACCTTCCCCTTCAAACAAAACCAACACCATGATTCTGCTGAGTGTGCCGTGTGCTTGAGCGTTCTAGAAGACGGAGAACACGTGAGGCTTCTTCCCAATTGCAAACACAGCTTCCACGTCAGCTGCATCGACACGTGGCTTTCTTCGCACTCCACGTGTCCCATTTGTCGGACCAAGGCCGGaccggtccagctcgaaccggtccgcctcgaaccTCAGCCCCGTGAGGGCCCCACTGGCTTGGTTCTTGCTGATGTTGTTGCACCCACGGCTCCTCTATTGTTTGAAAACGTGGAAGGAACCTCGGATGGTGCTAATAATAATGGGTCACCTAAGGTTAGTGGTTCGAATTCGAGGTTGAGTTCGTTCAGAAGGATTCTCAGTAGGGAGAGATCGATGAGGAGGATTCTACCTTCTAGCCATGATGATGTTGAACATGACTTAGAGAGGCAGTGA 720 0.4917 MDYFDHDHDHDPFHDHDDFNRRILIMAIVSLSVVLVLVFALHLYARVFLRRQTRRRAAIYQLSLNVAQAHAEPHNNTGLNPALITTLPTFPFKQNQHHDSAECAVCLSVLEDGEHVRLLPNCKHSFHVSCIDTWLSSHSTCPICRTKAGPVQLEPVRLEPQPREGPTGLVLADVVAPTAPLLFENVEGTSDGANNNGSPKVSGSNSRLSSFRRILSRERSMRRILPSSHDDVEHDLERQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01966 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Gma12g01966 239 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 7 239 - -
Gma12g01966 239 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Gma12g01966 239 PANTHER RING FINGER DOMAIN-CONTAINING 7 239 - -
Gma12g01966 239 MobiDBLite consensus disorder prediction 187 209 - -
Gma12g01966 239 SMART ring_2 103 144 IPR001841 -
Gma12g01966 239 CDD RING-H2_PA-TM-RING 102 145 - -
Gma12g01966 239 MobiDBLite consensus disorder prediction 188 209 - -
Gma12g01966 239 Pfam Ring finger domain 102 145 IPR001841 -
Gma12g01966 239 SUPERFAMILY RING/U-box 83 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01966 Gma-Chr12 40258221 40259088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01966 1 238 C3H Transcription Factor Family AT2G42360 45.098 1.06e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01966 K19038 - gmx:100780265 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01966 12 40258221 40259088 Gma12g01966 12 40258221 40259088 ECH
Gma13g02589 13 40749147 40750387 Gma12g01966 12 40258221 40259088 GST