Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01955 ATGTTAGAAAAGATGGATGATGGAGAAATCTCAAATGTTTTCCCCCACCAGAACCCTTCAATTGCTGCATCTAACAATCATGACCAGCCTCCTATCTTGAAGAGGAAGAGAAATCTCCCTGGAAATCCAGATCCTGACGCAGAAGTCATAACCCTATCCCCAAAGACTCTGATGGCCACAAACAGATTCGTGTGTGAGATTTGTCTCAAGGGTTTTCAAAGGGACCAAAACCTTCAACTCCATCGCCGAGGTCACAACCTTCCTTGGAAGTTGAAGCAAAGAACAAGCAAAGAAGTAAGGAAGCGAGTTTATGTGTGTCCAGAGAAGACATGTGTCCACCACCACCCTTCAAGAGCTCTGGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAGGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAAACATGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTCTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGCGATGCCTTAGCAGAACAAACAGCTAGGGTGAACGCAGCATCAAACATTAGCAACTACAGCATCATGCAAAATCCCGTAGGTTCTGACATGGCAACCCATTTTTCATCATTTTTCAAGCCAAATTCATGCCCTGATCAGGAGCCAGCACCAGGTAACCAAACATCTAATAAGGGTCTATCCCTTTGGATGACTCAAACATCTCAGGCTCATCATGAGACAATGGTTAACAACAATAATTTGCATGAATTTTATCAACTTGGGTCTGTTACAAGCCCAACAGCAATTTATGGTACTAGTGGCAATCCACTTGCTTCATGCTCGAATCCACCGCCCTCTAATTACCAGCTAAATTGGGTGCTTGGAAATAAACTCTCCACCAATGGAAGCCATCAAGAGCTAACTAGCACTGCTTCACTTCCACTAGTCAATAACATTGTTAAGGATAACCCAAACCTTCAACTCATAAGTGTCCCTTCCTTGTATAGCTCACAACACCAATCCCACCAAACAACCTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCATCGGACCCATCATCATTATTCCTTGCGAGCATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGCATGTACGGTTCAAGTTCAGTACTCACAAGTCATTGGAGTGAGGCAGAGaataataataataataataataatcataatCATTCGGGTGATTTGTCACAAATGCCCCCTACAAAACGACTCCACGTACAGAATGAAGAGAGTGCATGGGGACAGACTAGGGATTTTCTTGGTGTTGGTGCTGCCAACCATTTGCCACCCTTCATCAATCAACGGATGGATTTGAGTTGA 1443 0.4407 MLEKMDDGEISNVFPHQNPSIAASNNHDQPPILKRKRNLPGNPDPDAEVITLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWRCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEQTARVNAASNISNYSIMQNPVGSDMATHFSSFFKPNSCPDQEPAPGNQTSNKGLSLWMTQTSQAHHETMVNNNNLHEFYQLGSVTSPTAIYGTSGNPLASCSNPPPSNYQLNWVLGNKLSTNGSHQELTSTASLPLVNNIVKDNPNLQLISVPSLYSSQHQSHQTTSANMSATALLQKAAQIGTTSSDPSSLFLASIGLKCNSPGQDGNKFCGMYGSSSVLTSHWSEAENNNNNNNNHNHSGDLSQMPPTKRLHVQNEESAWGQTRDFLGVGAANHLPPFINQRMDLS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01955 480 Gene3D Classic Zinc Finger 97 187 - -
Gma12g01955 480 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Gma12g01955 480 MobiDBLite consensus disorder prediction 13 27 - -
Gma12g01955 480 MobiDBLite consensus disorder prediction 1 48 - -
Gma12g01955 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 478 - -
Gma12g01955 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Gma12g01955 480 MobiDBLite consensus disorder prediction 419 441 - -
Gma12g01955 480 PANTHER F-BOX ASSOCIATED PROTEIN 5 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01955 Gma-Chr12 40166215 40169328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01955 30 465 IDZ Gene Family AT1G03840 50.844 1.58e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g01955 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01955 K25870 - gmx:100778666 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01955 12 40166215 40169328 Gma12g01955 12 40166215 40169328 ECH
Gma13g02600 13 40828951 40831672 Gma12g01955 12 40166215 40169328 GST