Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01953 ATGACTCAGTGCAGTTACCCTGAAAACAACCATAGCATCATTGTGGAGAGGCACAAAGATAGCTTGATCAGAACATGTCCTACATGTGGTCATCACGTCAAATGCCAGGAGCAGGCTGCTGGAATTCATGACTTGCCTGGACTTCCTGCTGGAGTGAAGTTTGATCCTACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAGGTGCGCTCTGATATTCATAAGCTTCATCCTTTAATTGATGAGTTCATCCCTACTCTTGAAGGCGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGGTTGATCCGACATTTCTTTCACAGGCCTTCCAAAGCATACACGACCGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGCAGATGGCAGTGAGACACGGTGGCACAAAACAGGTAAAACTAGGCCAGTCTTCATAAGTGGCAAGTTGAAAGGGTACAAGAAAATTCTTGTGCTTTACACTAACTACAGAAAACAAAGGAAGCCCGAGAAAACAAACTGGGTCATGCACCAGTACCACCTTGGCAACAATGAAGAGGAGAAGGAAGGGGAGTTGGTGGTCTCCAAAGTTTTCTATCAAACACAGCCTAGACAATGTGGCTCACTCATGAAAGACTCATATCCTGCAAAACTAAAGGGTGAAGGCGTGCATGAGGTAACTAATCATAAGAACACTGGCTATGTTGAGTACTACAATAATTCTTTTGTATCCTTTGATCAAGGGGACCAGCATAGGTCCAGCACTGCACAATTAGTCTCCCATTTCCCAGTCCATGGTGGTGCTACTTTCATTCCTTGA 840 0.4488 MTQCSYPENNHSIIVERHKDSLIRTCPTCGHHVKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVFISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKDSYPAKLKGEGVHEVTNHKNTGYVEYYNNSFVSFDQGDQHRSSTAQLVSHFPVHGGATFIP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01953 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 278 IPR044799 GO:0003700
Gma12g01953 279 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
Gma12g01953 279 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Gma12g01953 279 MobiDBLite consensus disorder prediction 121 143 - -
Gma12g01953 279 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 278 - -
Gma12g01953 279 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Gma12g01953 279 MobiDBLite consensus disorder prediction 127 143 - -
Gma12g01953 279 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01953 Gma-Chr12 40156267 40159111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01953 24 224 NAC Transcription Factor Family AT4G28500 80.198 1.16e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma12g01953 NAM 3.6e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01953 12 40156267 40159111 Gma12g01953 12 40156267 40159111 ECH
Gma13g02602 13 40838838 40841203 Gma12g01953 12 40156267 40159111 GST