Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01952 ATGGTTCAGCAACTATTGCTGTTTCTGATTCTCTTTCCCTTTCTCTCTCTACCCCCCACTCTCTCTCTAAACCAAGATGGTCTCTTCCTCCTCGAAGCCAAACTCCAACTCTCTGACCCCAGAAACGCGCTCTCCAACTGGAACCACCGCGATGCCACCCCATGCAACTGGACCGCCGTCACGTGCGACGCCGGAGGCGGCGTCGCCACCCTCGACCTCTCCGATCTCCAACTCTCCGGCCCCGTCCCCGCCGCCGCCCTCTGCCgCCTCCCCTCCCTCTCCTCCCTCAACCTCTCCAACAACGATATCAACGCCACCCTCCCCGCCGCCGCGTTCACCCCCTGCGCCGCGCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCTCCGGCGCCATCCCCGCCACCCTCCCCGACTCCCTCATAACCCTCGACCTCTCCTCCAACAACTTCTCCGGCAAGATTCCGGCGAGCTTCGGCCAGCTCCGGCGACTCCAATCTCTCTCCCTCGTCAGCAACCTCCTCACCGGAACAATCCCCTCTTCCCTCAGCAAAATCTCAACCCTCAAAACGCTTCGCCTCGCTTACAACACCTTCGACCCCGGTCCCATTCCCAACGATCTCGGAAATCTCAAAAATCTCGAGGAGCTCTGGCTCGCAGGTTGCAACCTTGTGGGCCCCATCCCACCCTCTTTAGGAAAGTTAAGTAATCTTTTGAACCTTGACTTGTCGCAGAACAACCTCGTCGGATACATACCCGAACAACTCGTGTCGGGTTTGCGCAACATTGTACAAATCGAACTCTACGAGAACGCTCTCTCCGGCGCGTTGCCACGCGCCGCGTTTGCCAACCTCACCAACTTGGAACGATTCGATGCCTCCACGAACGAGTTGACTGGGACGATTCCGGAAGAGTTGTGTGGGTTGAAGAAACTCGAGTCGTTGATTTTGTACGCTAATAAATTCGAGGGTTCTCTGCCGGAGACTATAGTGAAATCGCAGAACTTGTACGAGTTGAAGCTGTTCAACAACTCGCTCACTGGGTCGCTGCCTAGTGGGTTGGGTAATAACTCTAAGTTGCAATTTTTCGACGTTTCGTTTAACCGATTCTCCGGCGAGATTCCGGCGAGGTTGTGCGGCGGCGGAGCGTTGGAGGAGCTGATTCTGATATACAATTCGTTTTCCGGGAGGATCTCTGAGAGTCTTGGGGAATGCAAGAGTTTGAGGAGGGTTAGGCTTAGGAACAATAACTTTTCCGGTGTTGTGCCTGAGGGGTTATGGGGTTTGCCCCATTTGTATTTGCTTGAATTTGTTGAGAATTCTCTTTCTGGGTCGATTTCTAATTCGATTTCCGGGGCTTGGAACTTGTCAATATTGTTAATTTCGGGGAATAAATTTTCTGGGTCGATTCCTGAGGGGGTTGGGGAATTGGGTAATCTTGAGGCTTTTGTTGCTGATCATAATAGTCTTACTGGTCGGATTCCAAAAAGTGTGGTTAGGTTGAGCCAGTTGGATAGGCTTGTTCTCAGAGACAATCAGCTTTTTGGAGAAATTCCCGTTGGAGTTGGGGGTTGGAGGAAGCTCAATGAGCTTGATTTGGCGAATAATAATAGGTTAAATGGGAGTATTCCTAAGGAGTTAGGGGACTTACCTGTGCTTAATTATCTTGATCTTTCAGGGAATCGGTTCTCTGGTGAGATTCCAATTAAGCTGCAGAATTTGAAGCTTAATTTGTTGAATTTGTCGAACAATCAGCTTTCTGGGGTGATTCCTCCTCTTTATGATAATGAGAATTATAGAAAGAGTTTTCTTGGGAATCCGGGTTTGTGCAAGCCTCTCTCTGGATTGTGTCCAAACTTGGGTGGTGAGAGTGAGGGTAAGAGCAGGAAGTATGCCTGGATTTTCCGGTTCATGTTTGTGCTTGCTGGGATTGTGTTAATTGTTGGGATGGCTTGGTTTTACTTCAAATTCCGGGACTTCAAGAAGATGGAAAAGGGGTTTCACTTCTCAAAGTGGAGGTCGTTTCATAAACTTGGGTTTAGTGAGTTTGAGATTGTTAAATTGCTGAGTGAGGACAATGTTATAGGGAGTGGAGCATCTGGGAAGGTTTACAAAGTTGCGCTGAGTAGCGAGGTGGTGGCAGTGAAGAAATTGTGGGGAGCAACTAAGAAGGGAAATGGATCTGTTGATTCTGAGAAGGATGGCTTTGAAGTTGAGGTTGAAACATTGGGAAAGATTCGGCACAAGAATATTGTGAAATTATGGTGTTGCTGCAACAGTAAGGATAGCAAGCTCTTGGTTTATGAGTACATGCCAAAGGGGAGTCTTGCTGATTTGTTGCACAGTAGCAAGAAAAGCTTGATGGATTGGCCCACTAGATATAAAATTGCTATTGATGCTGCTGAGGGGCTCTCATATTTGCATCATGATTGTGTCCCCTCTATTGTTCATAGGGATGTCAAATCTAGCAATATCTTGCTAGATGATGAATTTGGAGCAAAAGTTGCCGATTTCGGAGTTGCAAAAATTTTCAAGGGAGCCAACCAAGGGGCAGAGTCCATGTCTATTATTGCGGGTTCTTATGGTTACATTGCACCAGAATATGCTTATACTCTTCGGGTGAATGAAAAAAGTGACATTTATAGCTTTGGTGTGGTCATTTTGGAGTTGGTAACTGGGAAGCCCCCTCTTGATGCAGAGTATGGGGAAAAGGATCTAGTAAAATGGGTTCACTCCACATTGGATCAGAAAGGACAGGATGAGGTGATTGATCCCACTTTGGATATTCAATATAGGGAAGAAATCTGCAAGGTACTAAGCGTGGGGCTTCATTGCACTAACTCACTTCCTATAACCCGCCCTTCAATGCGTAGTGTGGTGAAAATGCTGAAGGAAGTAACTGAACTTCCAAAGTCCTTTAGTGGAAAACTCTCTTCTCCTTATTTTCAGGAAGAGACCTCGGATATTGATCACCAGGGAAGCTTAGTTTGA 2988 0.4809 MVQQLLLFLILFPFLSLPPTLSLNQDGLFLLEAKLQLSDPRNALSNWNHRDATPCNWTAVTCDAGGGVATLDLSDLQLSGPVPAAALCRLPSLSSLNLSNNDINATLPAAAFTPCAALRHLDLSQNLLSGAIPATLPDSLITLDLSSNNFSGKIPASFGQLRRLQSLSLVSNLLTGTIPSSLSKISTLKTLRLAYNTFDPGPIPNDLGNLKNLEELWLAGCNLVGPIPPSLGKLSNLLNLDLSQNNLVGYIPEQLVSGLRNIVQIELYENALSGALPRAAFANLTNLERFDASTNELTGTIPEELCGLKKLESLILYANKFEGSLPETIVKSQNLYELKLFNNSLTGSLPSGLGNNSKLQFFDVSFNRFSGEIPARLCGGGALEELILIYNSFSGRISESLGECKSLRRVRLRNNNFSGVVPEGLWGLPHLYLLEFVENSLSGSISNSISGAWNLSILLISGNKFSGSIPEGVGELGNLEAFVADHNSLTGRIPKSVVRLSQLDRLVLRDNQLFGEIPVGVGGWRKLNELDLANNNRLNGSIPKELGDLPVLNYLDLSGNRFSGEIPIKLQNLKLNLLNLSNNQLSGVIPPLYDNENYRKSFLGNPGLCKPLSGLCPNLGGESEGKSRKYAWIFRFMFVLAGIVLIVGMAWFYFKFRDFKKMEKGFHFSKWRSFHKLGFSEFEIVKLLSEDNVIGSGASGKVYKVALSSEVVAVKKLWGATKKGNGSVDSEKDGFEVEVETLGKIRHKNIVKLWCCCNSKDSKLLVYEYMPKGSLADLLHSSKKSLMDWPTRYKIAIDAAEGLSYLHHDCVPSIVHRDVKSSNILLDDEFGAKVADFGVAKIFKGANQGAESMSIIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPLDAEYGEKDLVKWVHSTLDQKGQDEVIDPTLDIQYREEICKVLSVGLHCTNSLPITRPSMRSVVKMLKEVTELPKSFSGKLSSPYFQEETSDIDHQGSLV 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01952 995 Pfam Protein kinase domain 690 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01952 995 Gene3D Phosphorylase Kinase; domain 1 670 769 - -
Gma12g01952 995 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Gma12g01952 995 Gene3D Ribonuclease Inhibitor 201 258 IPR032675 -
Gma12g01952 995 SUPERFAMILY L domain-like 325 605 - -
Gma12g01952 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Gma12g01952 995 SMART serkin_6 688 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01952 995 Gene3D Ribonuclease Inhibitor 259 618 IPR032675 -
Gma12g01952 995 ProSitePatterns Protein kinases ATP-binding region signature. 694 716 IPR017441 GO:0005524
Gma12g01952 995 Gene3D Transferase(Phosphotransferase) domain 1 770 975 - -
Gma12g01952 995 Pfam Leucine rich repeat 82 128 IPR001611 GO:0005515
Gma12g01952 995 Gene3D Ribonuclease Inhibitor 139 200 IPR032675 -
Gma12g01952 995 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Gma12g01952 995 SUPERFAMILY Protein kinase-like (PK-like) 687 962 IPR011009 -
Gma12g01952 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 967 - -
Gma12g01952 995 SUPERFAMILY RNI-like 71 419 - -
Gma12g01952 995 SMART LRR_typ_2 161 185 IPR003591 -
Gma12g01952 995 SMART LRR_typ_2 259 283 IPR003591 -
Gma12g01952 995 SMART LRR_typ_2 549 572 IPR003591 -
Gma12g01952 995 SMART LRR_typ_2 284 308 IPR003591 -
Gma12g01952 995 SMART LRR_typ_2 115 143 IPR003591 -
Gma12g01952 995 SMART LRR_typ_2 90 114 IPR003591 -
Gma12g01952 995 SMART LRR_typ_2 234 258 IPR003591 -
Gma12g01952 995 SMART LRR_typ_2 500 524 IPR003591 -
Gma12g01952 995 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 6 967 - -
Gma12g01952 995 ProSiteProfiles Protein kinase domain profile. 688 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01952 995 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Gma12g01952 995 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01952 Gma-Chr12 40145439 40148942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01952 18 995 Receptor kinase-like Gene Family AT1G28440 58.200 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma12g01952 Pkinase 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01952 - - gmx:100778128 1887.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01952 12 40145439 40148942 Gma12g01952 12 40145439 40148942 ECH
Gma13g02603 13 40847346 40850805 Gma12g01952 12 40145439 40148942 GST