Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01950 ATGTTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAGGGCAAGGAGAGATGATGGAGAGTTTCTCGATTGGAACCGATGATTTTGCTGACCTTTCAGAAGGGAACTTGCTTGAAAGCATCAACTTCGATGATCTCTTCATGGGAATCAATGACGATGAAGATGTCTTGCCGGATCTGGAGATGGACCCTGAGATGCTTGCTGAGTTCTCCCTCAGTACTGAGGAATCAGATATGGCCTCATCATCAGTTTCAGTGGAAAATAACAACAAATCTGCAGATAACAACAACAACAATGATGGGAATAATATAGTTACTACTGAGAAACAAGATGAGGTTATTGTTATAGCAGCCAATTCTTCTTCTGATTCGGGTTCGAGTCGAGGGGAGGAGATTGTAAGCAAGAGTGATGAATCAGTGGTGATGAATCCATCCCGTAAGGAAAGTGAGAAAGGAAGAAAATCATCAAATCATGCAGCAAGGAATAATAATCCTCAGGGGAAGAGAAAGGTTAAGGTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGACTGTCTCACCCGCCATAACATTGCAAGCCACCTTCAAAAATATAGATCGCATAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCAAGGTGGAGTCAAAGGAAACAATTGTTGGCAGCAGCAGGAGTAGGTAGAGGAGGAGGAAGCAAGAGAGAAGTGAACCCTTGGCTTACACCAACCATGGGTTTCCCTCCCATGACATCAATGCACCATTTTAGACCTTTACATGTATGGGGGCATCAAACCATGGACCAGTCCTTCATGCACATGTGGCCTAAACATCCACCATACTTGCCGTCACCGCCGGTATGGCCGCCACAAACAGCTCCGTCTCCACCGGCACCCGACCCTCTATATTGGCACCAACACCAACGGGCTCCAAACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGAGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTACCAAATACTAGATCCAGGCATTGGCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCGTCAAAGGAGAGCATAGATGCGGCTATTAGTGATGTTCTATCAAAACCATGGTTGCCACTACCTCTTGGCCTTAAAGCTCCAGCACTTGATGGTGTAATGGGTGAATTACAAAGACAAGGGATTCCAAAAATCCCTCCCTCTTATGCTTGA 1326 0.4759 MLAVSPLRSTRDEGQGEMMESFSIGTDDFADLSEGNLLESINFDDLFMGINDDEDVLPDLEMDPEMLAEFSLSTEESDMASSSVSVENNNKSADNNNNNDGNNIVTTEKQDEVIVIAANSSSDSGSSRGEEIVSKSDESVVMNPSRKESEKGRKSSNHAARNNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQLLAAAGVGRGGGSKREVNPWLTPTMGFPPMTSMHHFRPLHVWGHQTMDQSFMHMWPKHPPYLPSPPVWPPQTAPSPPAPDPLYWHQHQRAPNAPTRGTPCFPQPLTTTRFGSQTVPGIPPRHAMYQILDPGIGIPASQTPPRPLVDFHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGIPKIPPSYA 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01950 441 MobiDBLite consensus disorder prediction 130 157 - -
Gma12g01950 441 MobiDBLite consensus disorder prediction 342 356 - -
Gma12g01950 441 Gene3D - 167 228 - -
Gma12g01950 441 SUPERFAMILY Homeodomain-like 168 227 IPR009057 -
Gma12g01950 441 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 440 IPR044825 GO:0003700|GO:0045893
Gma12g01950 441 MobiDBLite consensus disorder prediction 74 129 - -
Gma12g01950 441 Pfam Myb-like DNA-binding domain 173 222 IPR001005 -
Gma12g01950 441 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 440 - -
Gma12g01950 441 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 170 224 IPR006447 GO:0003677
Gma12g01950 441 MobiDBLite consensus disorder prediction 309 324 - -
Gma12g01950 441 MobiDBLite consensus disorder prediction 309 356 - -
Gma12g01950 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 226 IPR017930 -
Gma12g01950 441 MobiDBLite consensus disorder prediction 72 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01950 Gma-Chr12 40117481 40121961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01950 1 392 G2-like Transcription Factor Family AT5G44190 35.629 3.90e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma12g01950 Myb_DNA-binding 5.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01950 - - gmx:100790591 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01950 12 40117481 40121961 Gma12g01950 12 40117481 40121961 ECH
Gma13g02605 13 40873966 40878207 Gma12g01950 12 40117481 40121961 GST
Gma06g02596 06 49250940 49256208 Gma12g01950 12 40117481 40121961 PCT