Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01948 ATGGCTCTGTTATTCAAGGATCCGTCGAAGATTTCGGCGTATCGAGATAGAAGGTTCCCCGGGACGCAAGAGGAGTTTGAGCACGCGCTTCTGACCTCAACCACCGTTTACGTGGGGAACATGTCGTTTTACACGACGGAGGAGCAAGTTTACGAGCTCTTCTCGCGTGCTGGGGAAATCAAAAAGATCATCATGGGCTTGGACAAGAACACAAAAACGCCTTGCGGCTTCTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAGGATGTTTGCAAATACATAAGTGGGACGATACTGGATGATCGTCCCATTCGAGTTGATTTTGATTGGGGATTTCAGGATGGTAGACAATGGGGGCGTGGGAGGAGTGGTGGCCAGGTCCGTGACGAATATCGCACTGATTATGATCCTGGTAGAGGTGGCTATGGGAAGCTGGTTCAGAAAGAATTAGAAGTACAAAGGCAGCTTGTAGATTATGGCACTGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCAACTTCCTATGGTAGACATGGTGGAGGTCATGGTCATGGTGGTTCCCATCGACATGGTAGAGATTACTATAGGAAGAGACACCGAGATGATGACCGCCACATACACGAGTCCTCAAAAAGAAATTCTGATCATGAATCTCGGAGGAACACTGACCACGAATCCAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATAGAAAAAGACGGGCTTAA 762 0.4685 MALLFKDPSKISAYRDRRFPGTQEEFEHALLTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDVCKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPTSYGRHGGGHGHGGSHRHGRDYYRKRHRDDDRHIHESSKRNSDHESRRNTDHESRPEKNPRFRESGDSDDDEEDDRKRRA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01948 253 CDD RRM_NCBP2 36 113 IPR034148 -
Gma12g01948 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Gma12g01948 253 MobiDBLite consensus disorder prediction 162 253 - -
Gma12g01948 253 SMART rrm1_1 35 108 IPR000504 GO:0003723
Gma12g01948 253 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 213 - -
Gma12g01948 253 MobiDBLite consensus disorder prediction 124 138 - -
Gma12g01948 253 SUPERFAMILY RNA-binding domain, RBD 28 144 IPR035979 GO:0003676
Gma12g01948 253 MobiDBLite consensus disorder prediction 120 140 - -
Gma12g01948 253 MobiDBLite consensus disorder prediction 197 253 - -
Gma12g01948 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Gma12g01948 253 Gene3D - 6 150 IPR012677 -
Gma12g01948 253 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 213 IPR027157 GO:0000339|GO:0005846|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01948 Gma-Chr12 40101734 40105658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01948 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 2.64e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01948 K12883 - gmx:100789535 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01948 12 40101734 40105658 Gma12g01948 12 40101734 40105658 ECH
Gma13g02607 13 40888686 40892120 Gma12g01948 12 40101734 40105658 GST