Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01942 ATGAAGCGTTATGTCTACATTGATGATGATGAATCATCTCATGATATTTACTGTGATAATCGTATATCAAACAGAAAATATACTGTATTAAACTTTCTTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTGCAGTTATGGCCTCTCATTACTCCAGTAAATCCTGTCAGTACATGGGGTCCTCTTATCTTTATTTTTGCTGTCTCTGCATCAAAAGAGGCGTGGGATGATTACAATAGATATCTTTCAGACAAGAAAGCAAATGAGAAGGAAGTCTGGGTTGTCAAGAAGGGCATCAAGAAACATATCCAAGCCCAGGATGTTCATGTAGGTAACATAGTATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTGATTGGCACCTCTGATCCTCAAGGAGTTTGCTATATAGAGACAGCTGCGCTGGATGGTGAAACTGATCTAAAGACACGGGTCATACCTTCTGCTTGCATGGGAATCGATGTTGATCTATTGCACAAAATTAAGGCAAGATCTTTTCTAAAGTATCTATGCTTGGGTGTAATTGAGTGTCCCTATCCAGATAAAGACATCAGGAGATTTGATGCAAACATGCGGCTGTTTCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACCATTCTTCAGTCATGTTACTTGAGAAACACTGAGTGGGCATGTGGAGTGGCTGTGTATACAGGCAAGCCCATGTATATGATAGGTATACCAGAACCAAAGCTCACTGCTATGGATGCTATGATTGACAAGTTGACTGGTGCTATATTTATATTCCAAATTGTTGTTGTTCTGGTTCTTGGGATAGCGGGTAATGTTTGGAAGGATACAGAAGCTAAGAAGCTATGGTATGTTCTTTACCCTCATGAAGGTCCCTGGTATGAACTGTTGGTCATCCCTTTGCGATTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGGTTTCGCTGGATTTGGTGAAGAGCTTGTATGCAAAATTTATTGACTGGGACCATCAAATGATTGACCTAGAGACTAGTATTCCATCCCATGCAACGAATACAGCGATAAGTGAGGACCTGGGACAAGTTGAGTACATTTTGACTGACAAAACAGGCACCCTCACAGAGAATAAGATGATATTTAGAAGATGTTGTATTAGTGGCAATTTCTATGGAAATGAGAATGGAGATGCATTGAAAGATGTAGAGCTTCTCAATGCTGTTTCCAGTGGTTCTTCTGACGTTGTACGATTTCTTACAGTTATGGCAATATGTAATACCGTCATACCTACACAAAGCAAAACTGGAGATATCTTGTATAAGGCACAGTCTCAGGATGAGGATGCCCTTGTCCATGCTGCTTCTCGATTGCATATGGTTTACTTTAATAAGAGTGGAAATATTCTTGAAGTCAAGTTCAGCACTTCAATACTTCAGTATGAAGTCCTGGAAACCTTAGAGTTTACCTCTGATAGGAAAAGAATGTCAGTAGTGTTAAAAGATTGCCAAAATGGAAAGATCCTTCTCTTGTCAAAAGGAGCAGATGAGGCTATTCTTCCATATGCCCGTGCTGGGCAGCAGACCCGACATTTCATTGAAGCTGTGGAGCAATATGCTCACTTGGGATTACGTACATTATGTTTGGCTTGGCGTGAGTTAAAGAGAGATGAATATCGAGAATGGTCTTTGATGTTTAAAGAGGCCAGTAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGTCAACGAGTAGAACATGACTTGGAAATTCTTGGTGTAACAGCAATAGAGGATCGTTTACAGGATGGAGTGCCTGAAACGATAGAAACACTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACTGGAGACAAGCAGAATACTGCAATACAAATTGCTCTGTCGTGTAATTTTATTTCACCAGAACCAAAGGGACAGCTTCTATCAATTGATGGCAAAACAGAGGAGGAGGTTTGTAGGAGTTTAGAGAGAGTGCTCCGTACTATGCGGATAACTACCTCAGAACCCAAGGATGTGGCTTTTGTTGTTGATGGCTGGGCACTTGAGATTGCACTTACCCACTATCGTAAAGCTTTCACTGAGCTGGCAGTTTTGTCAAGGACTGCTATATGTTGTCGTGTGACACCATCACAAAAAGCACAGCTTGTACAGATCTTAAAATCATGTGATTATAGAACATTGGCTATTGGTGATGGTGGGAATGATGTAAGGATGATACAGCAAGCTGATATTGGTGTGGGCATCAGTGGCAGGGAAGGATTACAGGCAGCAAGAGCAGCTGATTATAGTATTGGAAAGTTTAGATTCCTGAAGAGATTAATTCTGGTCCATGGCCGCTACTCCTACAACCGTACAGCATTTCTTTCTCAATATTCATTCTATAAGTCCCTACTGATATGCTTCATCCAAATCTTTTTTTCATTTATTTCAGGTGTCTCTGGAACTAGCCTCTTCAATTCTGTTAGCTTGATGGCTTATAATGTTTTCTATACTAGTGTTCCTGTTCTAGTTAGTGTGCTTGACAAAGATCTTAGTGAGGAAACTGTGATGCAGCATCCTCAAATTTTATTTTACTGCCAAGCAGGAAGGCTTCTAAATCCTAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCATGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTTTGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTTTCCGGGTGTATATGGTTGCAGGCTTTTGTAGTAACAATGGAGACCAATTCCTTTACTATATTGCAACATATGGCTATATGGGGTAATTTGGCTGCCTTTTATGTCATCAACTGGATCTTCAGCACGCTTCCTTCATCAGGGATGTATACAATTATGTTTCGGTTGTGTCGACAACCGTCATATTGGATAGCAATTTTTCTCATGGTTGCAGCGGGGATGGGTCCAATTCTAGCCATCAAGTACTTCCGATATACATATAGACCGAGCAAAATCAATACACTTCAGCAAGCTGAACGTCTGGGTGGGCCTATTTTGTCTCTTGGCACCATTGAGCCTCAGCCGAGATCTATAGAGAAAGATGTTTCTACCTTGTCAATAACACAACCCAAAAACAGAAATCCTGTGTATGAACCTCTGTTATCAGATTCTCCAAATGCCTCCAGAAGATCTTTTGGAGCAGGAACACCATTTGATTTTTTCCAGTCACAATCAAGATTATCAGTGTCGTCTAGCTACACACGAAATTGCAAGGACAACTGA 3345 0.4054 MKRYVYIDDDESSHDIYCDNRISNRKYTVLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPVSTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWVVKKGIKKHIQAQDVHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYIETAALDGETDLKTRVIPSACMGIDVDLLHKIKARSFLKYLCLGVIECPYPDKDIRRFDANMRLFPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAVYTGKPMYMIGIPEPKLTAMDAMIDKLTGAIFIFQIVVVLVLGIAGNVWKDTEAKKLWYVLYPHEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDHQMIDLETSIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGNFYGNENGDALKDVELLNAVSSGSSDVVRFLTVMAICNTVIPTQSKTGDILYKAQSQDEDALVHAASRLHMVYFNKSGNILEVKFSTSILQYEVLETLEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYARAGQQTRHFIEAVEQYAHLGLRTLCLAWRELKRDEYREWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEEEVCRSLERVLRTMRITTSEPKDVAFVVDGWALEIALTHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFVISIHAYAFDKSEMEEVSMVALSGCIWLQAFVVTMETNSFTILQHMAIWGNLAAFYVINWIFSTLPSSGMYTIMFRLCRQPSYWIAIFLMVAAGMGPILAIKYFRYTYRPSKINTLQQAERLGGPILSLGTIEPQPRSIEKDVSTLSITQPKNRNPVYEPLLSDSPNASRRSFGAGTPFDFFQSQSRLSVSSSYTRNCKDN 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01942 1114 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 392 1113 - -
Gma12g01942 1114 PRINTS P-type cation-transporting ATPase superfamily signature 635 645 - -
Gma12g01942 1114 PRINTS P-type cation-transporting ATPase superfamily signature 386 400 - -
Gma12g01942 1114 PRINTS P-type cation-transporting ATPase superfamily signature 757 776 - -
Gma12g01942 1114 SFLD p-type atpase 369 808 IPR044492 -
Gma12g01942 1114 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 12 337 - -
Gma12g01942 1114 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Gma12g01942 1114 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 1023 IPR023298 -
Gma12g01942 1114 Pfam E1-E2 ATPase 99 162 - -
Gma12g01942 1114 Gene3D - 452 599 IPR023299 GO:0000166
Gma12g01942 1114 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 607 669 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g01942 1114 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 724 841 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g01942 1114 ProSitePatterns E1-E2 ATPases phosphorylation site. 388 394 IPR018303 -
Gma12g01942 1114 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 12 337 - -
Gma12g01942 1114 Gene3D - 75 259 - -
Gma12g01942 1114 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 393 580 IPR023299 GO:0000166
Gma12g01942 1114 Pfam Cation transport ATPase (P-type) 443 539 - -
Gma12g01942 1114 SFLD C1.7: P-type atpase like 369 808 - -
Gma12g01942 1114 SUPERFAMILY Calcium ATPase, transduction domain A 100 254 IPR008250 -
Gma12g01942 1114 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 432 1030 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gma12g01942 1114 Pfam Phospholipid-translocating P-type ATPase C-terminal 785 1024 IPR032630 -
Gma12g01942 1114 Gene3D - 609 797 IPR023214 -
Gma12g01942 1114 SUPERFAMILY HAD-like 381 812 IPR036412 -
Gma12g01942 1114 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 392 1113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01942 Gma-Chr12 40065395 40078512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01942 1 1114 Primary Pumps ATPases AT5G44240 85.049 0.0 1987
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01942 K01530 - gmx:100786505 2152.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01942 12 40065395 40078512 Gma12g01942 12 40065395 40078512 ECH
Gma13g02613 13 40924461 40940736 Gma12g01942 12 40065395 40078512 GST