Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01940 ATGCCAGCCCAGAAGCGCTCTCTGCCCGACTCTCTCGACGAAGGGGACACTTCGCAGCAGAACCTCTTCCATTCTCGACATGCGAAGCAACAACAACAGGACCAGTCGCAGGAACACGACGAGGATGagaacgaagacgaagaaggagaagatggagaagaagaagaaggagaagaagaaggggaaggggaaggagaagaagatgaggaggaggaggaagaagaagaagtagaagaagCGGCGCAACATGACAACAACGACAAGGAAAAACCACAGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCCGAATTCGTGTATGTTGAACTTCTGGAAATTCGTAAAGATGTCCAATGCCCAATTTGCCTTGGCATTATTAAGAAGACAAGAACTGTTATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGATAAATCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACATTGTGCCAGTCGTCGTTCCTTGAGAGACGATCCAAATTATGATGCCCTCATTGCCGCTTTATATCCAGATATTGAGAAGTACGAACAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATAGCAAAAGTAGTTCAACGGCAATCTGAAGCATTGGTTAAGAGACGTAAAGACACACCAGGTGCATTTGTAACTAGACCGCAGCGTAATCAGCGAAACATTCATTCTAGGAGACAAACTCAAGCAATTGAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCAGCTGATGAACGAAGTACAGAACACCGGCAGAGAAGGAGAAAGAGATGGGCTAGAGTTCGCCCCTCTCAACCCTCATCATCCATGGCAAGTCCTGATGGTGGATGCAATGATAGTGATATGGATATAAGTAAAGAAAATCGTGGAATTTCAAGGCAGGTGTCGAAACATGGAAAGCTTACATGGGGAAGGGGTGGTTTTAGAAGTAACACTCGGCATGGCAGTGGTGGTGGTAGCAATAACAAAAGTTCTCGCAGTAGTCGATTGTCTAAGTTTGTTGACCATCTCCGCAACTTGGATGAAAACACTGATGAGTTTGATGTCCATCTCATGCTTGTTTCTCTTGACCAACTAAGTACACCAAGTTTGCAGCAACCTTACCTTTGCTGTCGACCAACTTTGTCTGTCAAGCACCTTTATGAACACGTTGCTCGTCAGACACCTTTGCCGGTTGAAGGAATTGAGATAGTGGCAGTCAAAGGATGCTGCAGTACGAACTGTGACAAGTCAGCTGATGAGAATTCGGCCCTTGCATATGATGAGCTATCAAAGCTGGTTATAGATCCACACAAAGATGAACTGGAAATTTTGCAAGGACATGAGACTCTGGCAGGGCTTAGATCCAAATGCATATCCAAGATGGGGCATTTGATTATTGCATACAAGCAGAAGGAGGTATCATAG 1503 0.4158 MPAQKRSLPDSLDEGDTSQQNLFHSRHAKQQQQDQSQEHDEDENEDEEGEDGEEEEGEEEGEGEGEEDEEEEEEEEVEEAAQHDNNDKEKPQDSDETPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEQEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPGAFVTRPQRNQRNIHSRRQTQAIEGSEDNEEENDNNEKDSSSADERSTEHRQRRRKRWARVRPSQPSSSMASPDGGCNDSDMDISKENRGISRQVSKHGKLTWGRGGFRSNTRHGSGGGSNNKSSRSSRLSKFVDHLRNLDENTDEFDVHLMLVSLDQLSTPSLQQPYLCCRPTLSVKHLYEHVARQTPLPVEGIEIVAVKGCCSTNCDKSADENSALAYDELSKLVIDPHKDELEILQGHETLAGLRSKCISKMGHLIIAYKQKEVS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01940 500 MobiDBLite consensus disorder prediction 38 80 - -
Gma12g01940 500 MobiDBLite consensus disorder prediction 223 361 - -
Gma12g01940 500 MobiDBLite consensus disorder prediction 81 105 - -
Gma12g01940 500 CDD RING-HC_RING1_like 122 162 - -
Gma12g01940 500 Coils Coil 191 219 - -
Gma12g01940 500 Pfam Zinc finger, C3HC4 type (RING finger) 121 161 - -
Gma12g01940 500 Coils Coil 63 87 - -
Gma12g01940 500 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
Gma12g01940 500 SMART ring_2 122 161 IPR001841 -
Gma12g01940 500 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 498 - -
Gma12g01940 500 PANTHER OS11G0578200 PROTEIN 1 498 IPR044592 -
Gma12g01940 500 MobiDBLite consensus disorder prediction 13 30 - -
Gma12g01940 500 MobiDBLite consensus disorder prediction 312 326 - -
Gma12g01940 500 MobiDBLite consensus disorder prediction 1 105 - -
Gma12g01940 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 192 IPR013083 -
Gma12g01940 500 MobiDBLite consensus disorder prediction 345 360 - -
Gma12g01940 500 MobiDBLite consensus disorder prediction 236 252 - -
Gma12g01940 500 SUPERFAMILY RING/U-box 108 176 - -
Gma12g01940 500 ProSiteProfiles Zinc finger RING-type profile. 122 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01940 Gma-Chr12 40040293 40051805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01940 115 185 C3H Transcription Factor Family AT3G23060 35.135 3.85e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01940 K10695 - gmx:100776547 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01940 12 40040293 40051805 Gma12g01940 12 40040293 40051805 ECH
Gma13g02615 13 40952972 40959194 Gma12g01940 12 40040293 40051805 GST