Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01938 atggttgccgctgaaagattgaagctttttttgtgtaagaggaggagggggcttagaattttgttgcgggttgcattttggtggtgggtggttctactgttggttaatccagtggcgggtctcagacccttgagagaaaggactaggtcctgggatgacgaggggctatttacaagaaaggaggagagcaacttaggtcctttttcacaatggaacataacaggaacttacaaagGGACTTGGAAGTTTTTAGATATCACAAATGGATCTTCCAGATTTCCTGACATCAGAAAAACAAATGGAAATTCTGTAATTGAATTAGTTAGTACGCCCACAAAGATGAGTGGGGTACATTATGTTCAGGGGGTAGTTATGTTCCATGATGTGTTTGACAATGAGTATGATGTTGGCGGTTCTCAAGTCAGAATAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAACCAATAGTGGAAAAGAGGGAGATTTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCGCGAGATAAGATGTGGAGAAGAAAGCATTCTTTGATTCATGACATGGAGAAACATTGTAATATTGAAATTGCTGCTCAGATTTCACACTTGCCATCACAAAATAACGAAGGTGAACATGATCATTTTCATCTAGAAGGGTTAATGGAGAGTCCCTCAGCTGATGATGATGGGGACTGCTTCTCACCATTACTGTTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTCACTTTTGTCTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGCGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACAGCTGCATTTTTCAAGTTTGTAGTTTTCTCAATATTTGAGATGAGATACCTCCTTGCTATCTGGAAGGCAAATAGGCCTTTGAGTAATGGGGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTACGAGTTCCATTATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTTTGGATACCTCAGATAATCACCAACGTTATTCGCGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGGATAACTGTTACTCGGCTTGCAATCCCATTATATATTTTTGGTTGCCCAAACAACTTCATGCGCATAAAGCCAGACAAGAGTTGGTGTGTGTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGTTCACGTTGGTTCATTCCTCGTGAGATTCTCCCCGAGAAATACAGCTATTATAGGAGGGTCGATCAGGATACACGACATGCTACTGACTGTGTTATTTGCATGACAGCCATTGATCTGTCCCCGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCCCGCTACCCCCCGCTTAA 1713 0.3468 MVAAERLKLFLCKRRRGLRILLRVAFWWWVVLLLVNPVAGLRPLRERTRSWDDEGLFTRKEESNLGPFSQWNITGTYKGTWKFLDITNGSSRFPDIRKTNGNSVIELVSTPTKMSGVHYVQGVVMFHDVFDNEYDVGGSQVRIEGVYIWPFRQLRMVTNSGKEGDLNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDMEKHCNIEIAAQISHLPSQNNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHYYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIKPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPREILPEKYSYYRRVDQDTRHATDCVICMTAIDLSPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01938 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Gma12g01938 570 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 9 570 - -
Gma12g01938 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Gma12g01938 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 570 IPR013083 -
Gma12g01938 570 Pfam Ring finger domain 519 564 IPR001841 -
Gma12g01938 570 SUPERFAMILY RING/U-box 502 569 - -
Gma12g01938 570 PANTHER RING ZINC FINGER PROTEIN 9 570 - -
Gma12g01938 570 SMART ring_2 520 563 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01938 Gma-Chr12 40019569 40028739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01938 520 567 C3H Transcription Factor Family AT4G12190 39.583 1.25e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01938 K23788 - gmx:100785460 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01938 12 40019569 40028739 Gma12g01938 12 40019569 40028739 ECH
Gma13g02618 13 40973939 40984882 Gma12g01938 12 40019569 40028739 GST