Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01936 ATGGGGTGCATAGCTTCCAAGAGTGCAGCTGTTGAAGACAGCAGGGAAGGTGTGGCAAGGGAATTCACTTCATCTAGCAAAAGGGCGACCGCGAAGATGAAGGTTTCCGCGTCGAATTCGGAGAAAAGGGTCGATGGAGTTTGGGGGAAAGACAAGGTTTTGGATGGTGTTGATATGAAAGCTTCATTAATTGACAAGGAATCCAGTGGTTCGATGCGGTCGAGTGATAATAAGAATGGGAGGAAGAAAAAGCAGAAACCTGAATTGGCTGTTCTTGATCATCCTGGTGTTGGAAGGGTTCCAAAGGCTTTAGAAGGAGAGCAAGTTGTAGCAGGGTGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCCAAGGGTGGATACCACGGAAGGCGGATACTTTTGAGAGGTTTCATAAAattggccaaggaacctacagtactgtgtataaggctcgtgatttgactgaccaaaagatcgttgcattgaagagggtacgctttgataattgtgatgctgagagtgtcaagtttatggcaagggaaatccttgttctgcgtaggcttgaccatccaaatgtaataaagttggaaggcttgataacatcgcagacatctcggagcttgtaccttgtttttgaatacatggaacacgatcttacaggacttgcatcaagtcctagcattaatttttctgaaccacaggtAgttaaatgctacatgcagcagcttcttagtggattggatcattgtcatagtcgtggtgtcctccaccgcgacataaagggctcaaatcttctcattgacaataatggcatcttaaagattgccgattttggtctggcaaattttattgacccccatcacaaggttccattgaccagccgtgtagtaactctgtggtatagaccaccagaacttttacttggagcatctaattatggagttgctgtggatttgtggagcactggttgcatactgggggaactatattgtggcagacctatattacctggaaaaacagaggttgaacaattgcataggatatttaaactttgtggctcaccatctgaggattattggcgtaagctgcggacgccacattcaacagtattcaggcctcCCCACCATTATAGGCAGTGTGTTGCTGAAACATTTAAAGAATGCCCATCTGCTGCCACAAGGCTTATTGAAACCCTACTTTCTTTAGATCCCACACTTCGAGGAACAGCAACTACAGCCCTGAAGAGTGAGTTCTTTTCATCGGAACCCCTTCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAAGAGATTGACACTAAATTGTGGAAAGAAGCATCAAGGCACGGAGCTGATGGAGGAAAGGAGCAAAAATTTAGACCAGGAGGTCGACAAGAGAAAGAACCTCAGACATTTATATTATCCAAAGACAATGCTGACTCTCACATATCAATGCAGCAAGGGAAACGCCTTCCAAACTCAAGGAGCCGGAATGAATTCTTCAACCCTCACAGAGAACCTGCGTTTGGACATTTGGTTTTTCCACAAAAGCAGTCAGAAGATCATAAAGAAACACTAAATTATTTCTCCGGCCCTCTTTATCAGAGGCCTTTGCATTCAGGTCCATTGGTTCCAGGTTATGGCTATGAAATGGCTGGAAGGGAAGCTGGTGGGCGGCCTCATGTTTCAAGCAAAGTCAACCTACCAAAACTATCTGGGTTAGTGGCATCTAGGACCTCATTGTCTGGAGATCAAAAAGAAAATCCAGTTCCGTTGAAGCCCCGAGAAACAATTCAAGTACAGGAGTCAACTAATGGATCAGAGTCAAGAAGAAGGCATGATAAAAAACGCCATTCTCAGACAATTGATCCCAGGCAAATCGAAAATGGAAAATTTTCAACTGAAACATTAATTCAGGATGGGCATGGATCCATGGGAAACAATATCTACCACCTCTCTGGTCCATTACTGCTTTCATCAAACAACATGGATCAGATGCTCAAAGAGCGTGATCGAAAGATCCAAGAATATTCAAGACGAGCAAGAATGTACAAGTCTGGATTTGGATAA 2082 0.2925 MGCIASKSAAVEDSREGVAREFTSSSKRATAKMKVSASNSEKRVDGVWGKDKVLDGVDMKASLIDKESSGSMRSSDNKNGRKKKQKPELAVLDHPGVGRVPKALEGEQVVAGWPTWLSSVAGEAIQGWIPRKADTFERFHKIGQGTYSTVYKARDLTDQKIVALKRVRFDNCDAESVKFMAREILVLRRLDHPNVIKLEGLITSQTSRSLYLVFEYMEHDLTGLASSPSINFSEPQVVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLANFIDPHHKVPLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGELYCGRPILPGKTEVEQLHRIFKLCGSPSEDYWRKLRTPHSTVFRPPHHYRQCVAETFKECPSAATRLIETLLSLDPTLRGTATTALKSEFFSSEPLPCDPSSLPKYPPSKEIDTKLWKEASRHGADGGKEQKFRPGGRQEKEPQTFILSKDNADSHISMQQGKRLPNSRSRNEFFNPHREPAFGHLVFPQKQSEDHKETLNYFSGPLYQRPLHSGPLVPGYGYEMAGREAGGRPHVSSKVNLPKLSGLVASRTSLSGDQKENPVPLKPRETIQVQESTNGSESRRRHDKKRHSQTIDPRQIENGKFSTETLIQDGHGSMGNNIYHLSGPLLLSSNNMDQMLKERDRKIQEYSRRARMYKSGFG 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01936 693 SMART serkin_6 136 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01936 693 MobiDBLite consensus disorder prediction 1 42 - -
Gma12g01936 693 PANTHER CYCLIN-DEPENDENT KINASE 1 687 - -
Gma12g01936 693 MobiDBLite consensus disorder prediction 23 37 - -
Gma12g01936 693 ProSiteProfiles Protein kinase domain profile. 136 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01936 693 Pfam Protein kinase domain 136 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01936 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Gma12g01936 693 MobiDBLite consensus disorder prediction 581 634 - -
Gma12g01936 693 MobiDBLite consensus disorder prediction 64 89 - -
Gma12g01936 693 SUPERFAMILY Protein kinase-like (PK-like) 130 429 IPR011009 -
Gma12g01936 693 CDD STKc_CDK9_like 136 421 - -
Gma12g01936 693 Gene3D Transferase(Phosphotransferase) domain 1 219 458 - -
Gma12g01936 693 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Gma12g01936 693 PANTHER CELL DIVISION PROTEIN KINASE 1 687 - -
Gma12g01936 693 MobiDBLite consensus disorder prediction 450 472 - -
Gma12g01936 693 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01936 Gma-Chr12 39984001 39990772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01936 128 464 Core Cell Cycle Gene Families AT5G10270 48.725 3.74e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma12g01936 Pkinase 2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01936 - K08819 gmx:100775462 1399.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01936 12 39984001 39990772 Gma12g01936 12 39984001 39990772 ECH
Gma13g02625 13 41028215 41033580 Gma12g01936 12 39984001 39990772 GST
Gma12g01936 12 39984001 39990772 Gma12g01016 12 11393921 11400064 PCT
Gma12g01936 12 39984001 39990772 Gma06g02622 06 49558005 49563793 PCT
Gma12g01016 12 11393921 11400064 Gma12g01936 12 39984001 39990772 PCT
Gma06g02622 06 49558005 49563793 Gma12g01936 12 39984001 39990772 PCT