Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01917 ATGGCTGCAGCGAACAGTGGCAAATTCGATGTGGGAGATGAAACTCACAAGAATTCACGAAAGGGTAGTGAAAGCCAAGATTGGGAGATTGAGAAGGGAAAGTGCGTGGATTGTTCAAGCTCTCAGAGGCGTCAATGGAAGCCAGTTTTTGATGACGTTTCCATCTCATACAATAGACCCTTCAAGAAAATCCGAAGCCCCGATCGCCAAAACACAAACCAAtcttcttcttcctcttcttcttcttcttcttcttcttctATTCCTTTTCAACCTTCACCTCTCTCTAATCCTCCTTCAAGAATAGTGTTCCCTTTTGCCTTTGATGGTTCCCAACAGCACCCCATGCAATTCCCTCACCAATTTGGAACCACAAACCCACCTTTCCCTCACCCTTCTCTCCAAAACCAGCAACACCAGATGATATCATTTGGGTCTTCCCAACAACATAATAATCTCGCATATCCACCCATCATAGCCAGTGATTCTTCTTCACTTCTAcatcaacatcatcatcatcaacagcagcatcagcagcaccagcagcaacttcttcagtaTTGGAGTGACGCGTTGAATCTAAGTCCAAGAGGAATGTTAACAAGATTGGGACCAGATGGAAGGCCATTGTTTAGGCTTCCAACACAGCCCATAAACACAACAAAACTCTATAGAGGAGTGAGGCAACGCCATTGGGGGAAATGGGTCGCTGAAATCCGTCTTCCACGAAACAGAACGCGTCTCTGGCTAGGCACATTTGACACGGCCGAAGACGCCGCCATGGCCTACGACCGAGAAGCCTTCAAGCTACGAGGAGAGAATGCTAGACTCAATTTCCCAGAATTGTTCCTCAACAAGGACAAAAAAGAAGAACAACAACAACAAGAACAAGAAGCTTCTTCGCCAGTTCTTTCAGCTATTGCAAAGCAGCATGAACCTTCTAGTGAACACCGTGACGTCCCCATAGAAGAGTCTAATGAGAATGATTCGGGTGACGCCACGGTGAGCGATGACCAGGTTCATGCTACTACTGAGAGTTCCGAAGGAGTTTCTCAGGAAATGGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCTGCTGCTTGGGGTCCTGGTAGTCCCATGTGGGATGATTTGGATGCCACCAATAATCTTCTTTGCCAATCACACATTCCTTTTTCCAATCCCAATCAACAAGAACTCAATGATGCTGAGAGACAAGAACAAAACACTGGACCAGGTTACTTGTGGAAGGATCAGGATTGA 1269 0.4263 MAAANSGKFDVGDETHKNSRKGSESQDWEIEKGKCVDCSSSQRRQWKPVFDDVSISYNRPFKKIRSPDRQNTNQSSSSSSSSSSSSSIPFQPSPLSNPPSRIVFPFAFDGSQQHPMQFPHQFGTTNPPFPHPSLQNQQHQMISFGSSQQHNNLAYPPIIASDSSSLLHQHHHHQQQHQQHQQQLLQYWSDALNLSPRGMLTRLGPDGRPLFRLPTQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKKEEQQQQEQEASSPVLSAIAKQHEPSSEHRDVPIEESNENDSGDATVSDDQVHATTESSEGVSQEMVWGEMSAWFNAIPAAWGPGSPMWDDLDATNNLLCQSHIPFSNPNQQELNDAERQEQNTGPGYLWKDQD 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01917 422 CDD AP2 222 282 IPR001471 GO:0003700|GO:0006355
Gma12g01917 422 Gene3D AP2/ERF domain 223 281 IPR036955 GO:0003700|GO:0006355
Gma12g01917 422 MobiDBLite consensus disorder prediction 57 103 - -
Gma12g01917 422 MobiDBLite consensus disorder prediction 311 325 - -
Gma12g01917 422 MobiDBLite consensus disorder prediction 1 43 - -
Gma12g01917 422 MobiDBLite consensus disorder prediction 327 351 - -
Gma12g01917 422 SUPERFAMILY DNA-binding domain 223 281 IPR016177 GO:0003677
Gma12g01917 422 SMART rav1_2 223 286 IPR001471 GO:0003700|GO:0006355
Gma12g01917 422 MobiDBLite consensus disorder prediction 67 91 - -
Gma12g01917 422 Pfam AP2 domain 224 272 IPR001471 GO:0003700|GO:0006355
Gma12g01917 422 ProSiteProfiles AP2/ERF domain profile. 223 280 IPR001471 GO:0003700|GO:0006355
Gma12g01917 422 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 405 - -
Gma12g01917 422 MobiDBLite consensus disorder prediction 10 38 - -
Gma12g01917 422 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 405 - -
Gma12g01917 422 MobiDBLite consensus disorder prediction 391 422 - -
Gma12g01917 422 MobiDBLite consensus disorder prediction 288 351 - -
Gma12g01917 422 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Gma12g01917 422 PRINTS Ethylene responsive element binding protein signature 246 262 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01917 Gma-Chr12 39796476 39798796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01917 188 396 AP2-EREBP Transcription Factor Family AT2G20880 52.113 9.69e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma12g01917 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01917 - - gmx:100101898 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01917 12 39796476 39798796 Gma12g01917 12 39796476 39798796 ECH
Gma13g02642 13 41184441 41186513 Gma12g01917 12 39796476 39798796 GST