Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01904 ATGGGCGAGGAGAGATCTGGTTTACAGAACAAAAGAGTGAAGATCCATGGAGAAGTTCTATTGGGGTTTATAATTATGTTGATCTGCACAATCCAGTTTTCAGTTGCAGACACTGATCCCGTCGATGCAGTCGCTGCAATTAATAGATTGTATACTGCATTGGGCAACCCTGTTCTTCCTGGGTGGGTTTCTAGTGCGGGAGACCCGTGCGGACAAGGGTGGCAAGGCGTTCAATGCAATGGCTCAGTCATACAAGAAATAATTCTGAATGGTGCAAACTTGGGAGGAGAACTGGGTGATAGCTTGGGAAGTTTTGTTTCTATCAGAGCAATAGTTCTAAACAACAATCACATTGGAGGAAGTATTCCATCCAGTTTGCCAGTCACATTACAGCACTTCTTTCTATCAGATAACCAGTTCACTGGAAGTATTCCAGCCTCTTTATCCACATTGACCGAACTGACTGACATGTCTCTTAACGACAATCTTCTAACAGGAGAAGTACCAGATGCATTTCAGTCTCTTATGCAATTGATCAATCTAGATTTATCTAATAATAATTTGAGTGGGGAATTGCCTCCATCTATGGAGAATTTGTCAGCTCTGACCAGCGTACATTTACAGAACAATAAACTGTCTGGGACCCTGGATGTTTTACAAGACCTTCCACTGCAAGATTTGAATGTTGAGAACAACCAGTTTGCTGGACCAATACCTCCGAAGTTGTTAAGCATCCCTAGCTTCAGAAAAGATGGAAACCCATTTAATCTCAATGACAATTCTACTATAGCCCCAGCACATCCACCACATTCTCCAGTGACAGCATCACCAACAGGAACTGTGGTTTCTGTTACGCCGTCGTCTGGACGTGTACCAACTAAACCGACCAAGGGACCAACTGCAGCAAAGGAATCAAATTCTGGGAAATCGAAAAAAAACACCAAAAAGGTGGTTTGGATATCTATTTCTGGTATATTGGTGTTTATAATTCTAGTACTGGGACTTCTTCTCTTTGTTCCAAGATGTAGCAGAAGAGAACGGGTTAACAGAAGTTCCAAGCAACATCAAGTTGGAGCATATGGAGGTGAAAGACAGAATCCTAGGGACTATGGGGCTTTTGTCCAACCACCTAGTCAAACTGAGAAAGTACCGAAAGGTGCTGTGGTGAGGCTGAAAGGGGATCATCAAGAAGAGGCAAGGAGATTGAGGACTATTCCAAAGCCGCAAGGCGAGCAAGAGAAGGATGAACAAAGAATGGAAACAATCCCAAAGCTGTTAGAGCATGAGATAGATATGAGTTCACTAGATGTATTTTCAATGCCTTCTCCACCGCCACCTCCTCCACCACTTCCTGCTGAGAGGGTTATTGTTGAATCAGCCTCATTCCACAAAGAGGCTAACATCAATCCTCCCAAAAAAAGTCCTGTTCCTCCCACTTTTGTGAAAACTTTCACCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATCTTATAGGTTTAGGCATGCTAGGGAGTGTGTATAGGGCAGAGCTTCCAGATGGAAAGATACTTGCTGTGAAGAAACTAGACAAGAGAGTTTCTGATCACCAAACAGATGATGAGTTTCTTGAATTGATAAACAGTATTGACAGAATCCGGCATCCAAATATTGTTGAGCTTATTGGGTACTGTGCAGAGCATGGTCAAAGGCTTCTGATTTATGAGTATTGCAGTAATGGGTCGCTGCAGGATGCACTCCATTCACATGATGAATTCAAAACAAGACTGTCATGGAATGCTCGCATTCGGATAGCACTCGGGGCAGCTAGATCCTTAGAGTACTTGCATGAGCAGTTTCAGCCACCAGTTGTACACAGAAATTTCAAGTCTGCTAGCATTCTCCTCTATGATGATGTTTCTGTGCGTGTATCTGATTGTGGTTTGTCTCCACTAATAACTAAAGGTTCTGTAAGTCAGCTCTCAGGACAACTGCTAACAGcatatggctatggggctccagagtttgagtcaggaatttacacataccagagtgatgtttacagctttggagtagttatgttagaaCTTTTGACAGGCCGTCAGTCCTATGACAGGACACGCCCTCGAGGGGAGCAGTTTCTGGTGAGGTGGGCTATTCCTCAGCTTCATGACATTGATGCATTATCAAAGATGGTTGATCCCTCTCTAAAAGGAAATTACCCTGCCAAATCATTGTCAAATTTTGCAGACATTATTTCAAGATGTGTTCAGTCAGAGCCAGAATTTAGGCCAGCAATGTCAGAAGTGGTCTTGTACTTAATAAATATGATAAGAAAGGAAAATCAGAAAAGTCAATCAAATGAATAA 2358 0.4105 MGEERSGLQNKRVKIHGEVLLGFIIMLICTIQFSVADTDPVDAVAAINRLYTALGNPVLPGWVSSAGDPCGQGWQGVQCNGSVIQEIILNGANLGGELGDSLGSFVSIRAIVLNNNHIGGSIPSSLPVTLQHFFLSDNQFTGSIPASLSTLTELTDMSLNDNLLTGEVPDAFQSLMQLINLDLSNNNLSGELPPSMENLSALTSVHLQNNKLSGTLDVLQDLPLQDLNVENNQFAGPIPPKLLSIPSFRKDGNPFNLNDNSTIAPAHPPHSPVTASPTGTVVSVTPSSGRVPTKPTKGPTAAKESNSGKSKKNTKKVVWISISGILVFIILVLGLLLFVPRCSRRERVNRSSKQHQVGAYGGERQNPRDYGAFVQPPSQTEKVPKGAVVRLKGDHQEEARRLRTIPKPQGEQEKDEQRMETIPKLLEHEIDMSSLDVFSMPSPPPPPPPLPAERVIVESASFHKEANINPPKKSPVPPTFVKTFTIASLQQYTNSFSQDNLIGLGMLGSVYRAELPDGKILAVKKLDKRVSDHQTDDEFLELINSIDRIRHPNIVELIGYCAEHGQRLLIYEYCSNGSLQDALHSHDEFKTRLSWNARIRIALGAARSLEYLHEQFQPPVVHRNFKSASILLYDDVSVRVSDCGLSPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRTRPRGEQFLVRWAIPQLHDIDALSKMVDPSLKGNYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLINMIRKENQKSQSNE 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01904 785 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Gma12g01904 785 Gene3D Transferase(Phosphotransferase) domain 1 574 785 - -
Gma12g01904 785 Gene3D Ribonuclease Inhibitor 44 268 IPR032675 -
Gma12g01904 785 Pfam Protein tyrosine and serine/threonine kinase 499 768 IPR001245 GO:0004672|GO:0006468
Gma12g01904 785 Gene3D Phosphorylase Kinase; domain 1 459 573 - -
Gma12g01904 785 ProSiteProfiles Protein kinase domain profile. 496 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01904 785 PANTHER OS01G0253100 PROTEIN 31 784 IPR045271 GO:0004714|GO:0006468
Gma12g01904 785 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 31 784 - -
Gma12g01904 785 SUPERFAMILY Protein kinase-like (PK-like) 471 770 IPR011009 -
Gma12g01904 785 SUPERFAMILY L domain-like 49 247 - -
Gma12g01904 785 MobiDBLite consensus disorder prediction 254 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01904 Gma-Chr12 39662975 39669156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01904 33 781 Strubbelig Receptor Gene Family AT4G03390 61.942 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gma12g01904 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01904 - - gmx:100811490 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01904 12 39662975 39669156 Gma12g01904 12 39662975 39669156 ECH
Gma13g02656 13 41298571 41306081 Gma12g01904 12 39662975 39669156 GST
Gma12g01904 12 39662975 39669156 Gma12g00968 12 10101471 10108530 PCT
Gma12g01904 12 39662975 39669156 Gma06g02653 06 50053146 50060013 PCT
Gma12g00968 12 10101471 10108530 Gma12g01904 12 39662975 39669156 PCT
Gma06g02653 06 50053146 50060013 Gma12g01904 12 39662975 39669156 PCT