Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01887 ATGGCTCAAGAAATGAAAGAGCCTGCAGTGAACATCATAGAGCAATCTCAAGTTGCTCCCCCACAAGATTCCCTTCATTCAACCATTCTCCCCCTCACTTTTCTGGACATTCCATGGTTCCTAACCCGCCACGCCAGACGCATCTTCTTCTATGAGTTTCCCTTTCCTACCACCCACTTCCTCCAAACAGCACTTCCCACCCTGAAACACTCTCTTTCCCTCACTCTCCAACATTTCTTCCCCTTTGCCTCTAATCTCATCCTCCCTCCACGTCTCCATGTCCCTTACATCCGTTACCTTAACGGCGACTCTGTCTCGTTCACTGTCTCAGAGTTCAGTCCTGCAAACTTCACGCTTCTCACGTCAAATTCCCCTCAAGATGTCAATGACTGGCAACCCCTTGCTCCGGCATTTCCCTCGCCACGCACTACACACGACGGCACGTGCGAGTTCCCCCTCATGGCCATTCAGGTAACGGTGATACCTAACTCTGGATTCAGCATATGTGTTATCTTCAACCACGTTGCAGGAGATGGGAGAACCCTTCATCATTTCATGAAGTTTTGGGCCTCAGTTTGCAAGGCCAAAGGGGATTTGAATTTCCCTGGCTCTGTGCCTCTACCCTTATATGATAGGGACATAGTGAAAGACCCCAAAGGGCTCATGCACGTTTACGTGCAAGAGATGAGAAATTCAGCGTTGCAAAATAAGCATTTCGGAGGGTTTTTACGTGGTGTTTACGCTGACAAGTTCAGGGACTTTACATATATCAACCTTTGTAGTGACATGTTCTTTGATATGGACTGTCATAACCATCCTCAGTTTTCATTACCTTCAAACTACTTTGGGAACTGTTTGATCCCTCTCCTCACAACCCTAAAGAGGGGTGAGTTGGTGGGACAAAATGGGATTGTTGCAGCTGCAAATGCCATTGAAAGGAAGATTAGAGATTTCAAGAGTGATGCTTTGAGATTGGCTGAAACAACGATGTCAGATATTAGAGGCTTAGGGAAATGTGGTCAATCTCTTGTGGTGATTGTTGGCTCGCCGAAACTTACTGCGTACAACACTGACTTTGGATGGGGGAAGCCCATAAAGTCAGAAGTGGTGAATCTTGATTCTGTGCGAACAGTTTCTCTCACTGATTGTAGAGACCAAGAAGGTGGAATTCAGGTTGGAATAGTACTCGAGAGGATTCAAATGAACAATTTCACTAACATCTTGGAAGAACACCTTAGTCATATTGCAGTTCTTGACTAA 1260 0.4595 MAQEMKEPAVNIIEQSQVAPPQDSLHSTILPLTFLDIPWFLTRHARRIFFYEFPFPTTHFLQTALPTLKHSLSLTLQHFFPFASNLILPPRLHVPYIRYLNGDSVSFTVSEFSPANFTLLTSNSPQDVNDWQPLAPAFPSPRTTHDGTCEFPLMAIQVTVIPNSGFSICVIFNHVAGDGRTLHHFMKFWASVCKAKGDLNFPGSVPLPLYDRDIVKDPKGLMHVYVQEMRNSALQNKHFGGFLRGVYADKFRDFTYINLCSDMFFDMDCHNHPQFSLPSNYFGNCLIPLLTTLKRGELVGQNGIVAAANAIERKIRDFKSDALRLAETTMSDIRGLGKCGQSLVVIVGSPKLTAYNTDFGWGKPIKSEVVNLDSVRTVSLTDCRDQEGGIQVGIVLERIQMNNFTNILEEHLSHIAVLD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01887 419 Pfam Transferase family 265 407 - -
Gma12g01887 419 Pfam Transferase family 10 196 - -
Gma12g01887 419 PANTHER - 10 252 - -
Gma12g01887 419 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 263 416 - -
Gma12g01887 419 Gene3D - 255 415 IPR023213 -
Gma12g01887 419 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 10 252 - -
Gma12g01887 419 Gene3D - 9 240 IPR023213 -
Gma12g01887 419 PANTHER - 263 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01887 Gma-Chr12 39538764 39540194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01887 10 410 Monolignol Biosynthesis Gene Families AT5G48930 22.271 8.53e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01887 - - gmx:102667695 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01887 12 39538764 39540194 Gma12g01887 12 39538764 39540194 ECH
Gma13g02672 13 41424824 41426922 Gma12g01887 12 39538764 39540194 GST