Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01885 ATGCTAGCTTCAACAGATAAGTTCCTTTCATATTCTTCAGAAATTCCATCCAAGAAAATGGTGGTTCTTAGAGAACACAAGCTTGTTGGAAAAATTCAGGTTGTTCCAGCAGTGAGAACAATCACCACTCTTCCCCTCACATTCCTTGATTTGCCTTTGGCAGGTCCTATTTATGTGAGACGCCAATTCTTCTATCAGTTCCCCCATTCCACACTCCATTTCTCTGAAACCACCCTTCCTTCTCTCAAAACCTCTCTCTCTAAAACCCTTCAACACTTCTTCCCTCTCGCTGGAAACCTCATTTGTCCTCCACCACCCCACAAACCCTTCATTCGCTGCACCGATGATGACTCTGTCACCTTAACCATCATCGAGTCCCAAGCAGATTTCAAAAATCTATCATCAAACCACCCCAAAAGCCTCAAAGACTTGGATCACTTGGTTCCCAAGTTAACATGCACATATACACACGATGACACGTTCATTTTCCCTTTGGTGGCATTGCAAGCCACGGTTTTCCCCAACCATGGCCTTTGCATCGCAATCACGTATTGCCACGTGATGGATGATAACTGTTGCAGCCATTTCATGAAGTCTTGGTCTTCCATTTGTCGAAGTGGTGGAGTTGACTTGACTCTTGTGGAGAAGTCAACGCCTTGCTTTGATAGGGAAGTGTTGAAGGACCCCAAAGGACTCGAAGCTATCTTCTTAAGAGATTATTTTGAAGAGAGGTCAAGTTGGAAGGTTGGTAAAACTTCTGAGATTTCCAATGAAAATACTGAAGATTATGTCAAAGCAACGATTGTTTTTGGAAGAGAAGACATTGAGGGGCTAAGAAGATGGGTGCTGAATCAGTGGAAGAAGAGTGAGGAATTCAACACGCCACAATATATGTCAAAATTTGTGGTGGCATGCGCTTTTGTGTGGGCTAGTTTGGATAAAACAAGATGCATAAATGATGAAGAAGAAAATGTGAAAGAGAAGTATTTTGGTTTCACTGCTGATTGCAGGGATCGCCTTGGGTATCCTATACCAGAAACATACTTTGGAAACTGCTTAACTCTATGTTATGCAATGCTTAAGAGAAATGACCTAAAGGGAGAGAATGGTTTTGTAAATGCGGCCAAGGTCATTGAAAGAGCTGTGGCTGATATGAAAATTGAACCCTTGAAAGATGTAGAACACTGGAGGGAGTCGTTTATGAAGATGTACGTGTTGGAAAGTACCTTGATGGTTACAGGGTCACCCAAGTTCACTGTTTATGAGACTGATTTTGGATTTGGAAGGCCTACCAAAGTGGAAATGGTACATCTCTTCAAGTGTATTTCTCTAGCTGAAAGTGGAGATGAGGAAGGAGGACTTGAGGTTGGTTTGGTGTGTAGAAGTACAGAGTTTGAAGATTTATTTTCTGTCATTGAACAAGGACTAAAAGCTTCAAAATCCTAA 1446 0.4198 MLASTDKFLSYSSEIPSKKMVVLREHKLVGKIQVVPAVRTITTLPLTFLDLPLAGPIYVRRQFFYQFPHSTLHFSETTLPSLKTSLSKTLQHFFPLAGNLICPPPPHKPFIRCTDDDSVTLTIIESQADFKNLSSNHPKSLKDLDHLVPKLTCTYTHDDTFIFPLVALQATVFPNHGLCIAITYCHVMDDNCCSHFMKSWSSICRSGGVDLTLVEKSTPCFDREVLKDPKGLEAIFLRDYFEERSSWKVGKTSEISNENTEDYVKATIVFGREDIEGLRRWVLNQWKKSEEFNTPQYMSKFVVACAFVWASLDKTRCINDEEENVKEKYFGFTADCRDRLGYPIPETYFGNCLTLCYAMLKRNDLKGENGFVNAAKVIERAVADMKIEPLKDVEHWRESFMKMYVLESTLMVTGSPKFTVYETDFGFGRPTKVEMVHLFKCISLAESGDEEGGLEVGLVCRSTEFEDLFSVIEQGLKASKS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01885 481 Gene3D - 260 478 IPR023213 -
Gma12g01885 481 Gene3D - 27 252 IPR023213 -
Gma12g01885 481 Pfam Transferase family 34 456 - -
Gma12g01885 481 PANTHER - 20 481 - -
Gma12g01885 481 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 20 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01885 Gma-Chr12 39513827 39515272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01885 38 430 Monolignol Biosynthesis Gene Families AT5G48930 24.029 1.19e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01885 - - gmx:100811456 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01885 12 39513827 39515272 Gma12g01885 12 39513827 39515272 ECH
Gma13g02675 13 41448018 41449412 Gma12g01885 12 39513827 39515272 GST