Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01879 ATGGATTTTGACCTCGAAAACCCTCTTGGAAACTTCCACGACCTTCCTTGTGACGCTGTCCCTTCCCTCTTCCTCATCGAATCCGACCACATCCCTCCACCCAACTACTGTCAGAGTTTCAAGGCCAGCGACTTCGACATCTCTGTAAGAAGAGACGTTGTCTCTTTGATCTCGCAGTTGTCCTGCACCTTCGATCCGGTTCTTCCTTACTTAGCTATTAACTACTTGGATCGCTTCCTCGCTCACCAAGGAATATTGCAACCAAAGCCATGGGCAAACAAGCTCCTTGCAATCTCTTGCTTTTCTCTAGCTGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTCCAGGTTCTTATGAATCATGGTGATGGGGGTGCCATTTTTGAGGCACAGACAATTCAAAGAATGGAAGGCATTGTCTTGGGGGCTCTACAATGGCGAATGCGTTCGATCACCCCCTTCTCTTTCATTCCCTTCTTCGTCAACTTGTTCAGGCTTAAAGACCCTGCATTGAGGCAGGTTCTGAAGGATGGAGCATCAGAAATCATACTCAAGTCACAAAGAGAGATAAAGGTCTTGGAATTCAAGCCATCTACAGTTGCTGCGTCAGCCCTTCTGTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCGTGCTTCTTAAGAGCAATATCCGATTGTTCATATATTAATAAGGAAACTGTGGTGCAATGTTATAATGTGATACACGACATAACCAGGGAGGAGTACGAATCAGTGTTGAATATAAATTCAACTTCAGACACACCGGTTAATGTGTTAGACGAACATTTTCTGAGTTTGGAAAGTGAAAAAACCAACGGAACCAACGTTGTGACACAAGAGCAGGATTTCAAAAGAAGGAAAACCACCGATTATGGCAACAATCGCACGGTCCCGTTTTCACATTTTCATCAATGCTGA 948 0.4441 MDFDLENPLGNFHDLPCDAVPSLFLIESDHIPPPNYCQSFKASDFDISVRRDVVSLISQLSCTFDPVLPYLAINYLDRFLAHQGILQPKPWANKLLAISCFSLAAKMLKTEYSATDVQVLMNHGDGGAIFEAQTIQRMEGIVLGALQWRMRSITPFSFIPFFVNLFRLKDPALRQVLKDGASEIILKSQREIKVLEFKPSTVAASALLYASHELFPFQYPCFLRAISDCSYINKETVVQCYNVIHDITREEYESVLNINSTSDTPVNVLDEHFLSLESEKTNGTNVVTQEQDFKRRKTTDYGNNRTVPFSHFHQC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01879 315 SUPERFAMILY Cyclin-like 13 150 IPR036915 -
Gma12g01879 315 SUPERFAMILY Cyclin-like 135 249 IPR036915 -
Gma12g01879 315 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 302 - -
Gma12g01879 315 Gene3D - 23 242 - -
Gma12g01879 315 CDD CYCLIN 50 143 IPR013763 -
Gma12g01879 315 Pfam Cyclin, N-terminal domain 28 150 IPR006671 -
Gma12g01879 315 Gene3D - 33 151 - -
Gma12g01879 315 PANTHER CYCLINS 5 302 IPR039361 -
Gma12g01879 315 SMART cyclin_7 157 246 IPR013763 -
Gma12g01879 315 SMART cyclin_7 51 144 IPR013763 -
Gma12g01879 315 CDD CYCLIN 153 245 IPR013763 -
Gma12g01879 315 Pfam Cyclin, C-terminal domain 153 251 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01879 Gma-Chr12 39464176 39465964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01879 1 299 Core Cell Cycle Gene Families AT4G03270 45.367 3.31e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01879 K18812 - gmx:100811659 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01879 12 39464176 39465964 Gma12g01879 12 39464176 39465964 ECH
Gma13g02680 13 41482834 41484854 Gma12g01879 12 39464176 39465964 GST
Gma12g01879 12 39464176 39465964 Gma12g00943 12 9792774 9794738 PCT
Gma12g01879 12 39464176 39465964 Gma06g02674 06 50319920 50321920 PCT
Gma12g00943 12 9792774 9794738 Gma12g01879 12 39464176 39465964 PCT
Gma06g02674 06 50319920 50321920 Gma12g01879 12 39464176 39465964 PCT