Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01878 ATGAGAACTCCATCTTCCTCTCACAAAAGTGGACTTAACAAAGGCACTTGGACTCCAGAGGAAGATGCCAAGTTAATAGCTTATATCACTCGTTATGGCTCTTGGAATTGGCGCCAACTCCCAAGATTTGCAGGACTGGCAAGGTGTGGAAAGAGCTGCAGGCTTAGGTGGCTAAATTATCTCAGGCCCAACATAAAAAGAGGGAACTATACTAAAGAAGAAGAAGAGATTATAATCAGACTGCACGAAAAGCTGGGTAACAAATGGTCTGTGATTGCCACTCATTTACCCGGAAGAACAGATAACGAAATAAAGAACCACTGGCACACCACTCTCAAAAAACGTTTTGGAAAGAACACAGTTCACCCCAATAAAAAAGTGAAAGCCACAAAATCAAATAGTTCTGGATCCAAGGAAATTCAGAAAGTTGGTTTCTTTCACAGTAGTTCTACAATAACAACTTCTGAAACCTCTGATTCTGTCCCTTTGTCCCCAAGAGAATTCTCGTCCACAACCTCGGACTATACCACAGTTGTCACTAACGAAAATTTCTTACTGGAAGACGGGTTCGATTTTCTAGAAGCATGCTTAGAGGACGTGAACGAGAATATTTGGACAGAGACAAATGCAGCTAGCATTTCCAATTCCAAGACCCCAATGCTAGATAATGGTAATGGTAGTAATTTTCATGGTTCAGATGCTGCAGGGCCCATCATGGAATATAACGAAAATTTGGTTCTGGAGAATGATGAATTTGCGTTTCTAGAAGCATTGCAGCCAACAGTAACAACTGAGAATTTTTTGACAGACATGTCCCTTGTTCCAAACGAATTACTTGCCCCTTTGGTGAACGAATCTGAGGAATACTTTTCTTCCTTGTACGATGTGGACCTTTGGTGTCCCAGTAATTTCCATGATTTGCACGTGGGCTTATTGCAATGA 942 0.414 MRTPSSSHKSGLNKGTWTPEEDAKLIAYITRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTKEEEEIIIRLHEKLGNKWSVIATHLPGRTDNEIKNHWHTTLKKRFGKNTVHPNKKVKATKSNSSGSKEIQKVGFFHSSSTITTSETSDSVPLSPREFSSTTSDYTTVVTNENFLLEDGFDFLEACLEDVNENIWTETNAASISNSKTPMLDNGNGSNFHGSDAAGPIMEYNENLVLENDEFAFLEALQPTVTTENFLTDMSLVPNELLAPLVNESEEYFSSLYDVDLWCPSNFHDLHVGLLQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01878 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma12g01878 313 CDD SANT 69 112 IPR001005 -
Gma12g01878 313 CDD SANT 16 61 IPR001005 -
Gma12g01878 313 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 227 - -
Gma12g01878 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma12g01878 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Gma12g01878 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma12g01878 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma12g01878 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma12g01878 313 Gene3D - 68 143 - -
Gma12g01878 313 SMART sant 66 114 IPR001005 -
Gma12g01878 313 SMART sant 13 63 IPR001005 -
Gma12g01878 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma12g01878 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma12g01878 313 Gene3D - 6 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01878 Gma-Chr12 39452150 39453940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01878 2 159 MYB Transcription Factor Family AT2G31180 53.988 3.04e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g01878 Myb_DNA-binding 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01878 K09422 - gmx:100811124 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01878 12 39452150 39453940 Gma12g01878 12 39452150 39453940 ECH
Gma12g01878 12 39452150 39453940 Gma06g02675 06 50334994 50336478 PCT
Gma12g00936 12 9641997 9643461 Gma12g01878 12 39452150 39453940 PCT