Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01877 ATGGTGAAAAACACTTACTCTGATAAAAGTGGACATAGGAAAGGAACATGGACACCAGAGGAAGACAAGAAATTGATTGCTTATATTACCAGATATGGTCACTGGAATTGGAACCTACTCCCCAAGTTTGCTGGTCTTGAGAGGTGTGGAAAAAGTTGCAGGCTAAGGTGGCTGAATTACTTAAGGCCTAATATCAAAAGAGGGAACTACACTCAAGAAGAAGATGAAACTATTATCAAGATGGTCCAACGTCTCGGTAACAGATGGTCTCTCATTGCTGCTCAGCTGCCAGGAAGAACAGACAATGAAATAAAAAACTACTGGCACACCAATCTCAAGAAGAAATATCATCAACAGAATGTTAATGCTGAAACTGAAGTTTCCAAGTCAAAAGATCATCAATCTCCAGATGAAGCACTACCAAAGCCAAACAATGTAGATGATGTTCCTTTCCAAAACCTTCCACCCACTTCTCAATCCACCGATTCATGCACGACGTCATCAATAATAATATCCCCAACCCAATTCTCTATAACCACCACAGGTCGTAGCTCTGATGATAGCAAAGAAAAGTTTGATATTCCTTATGAGGATGAGTTTGCTTTTGCAGATGTTATGAACGAAAGCTTCTGGTTGGAACCATATGTTGTTGACATTTCGTGCTATCCTAGTGATGTATTGGTGGCTGAACCGGATTGCTTTAGCCCTGTGCCTGACGTAGAACTTTGGAGTCATGATCATGAATACTTTGCGTGA 756 0.4074 MVKNTYSDKSGHRKGTWTPEEDKKLIAYITRYGHWNWNLLPKFAGLERCGKSCRLRWLNYLRPNIKRGNYTQEEDETIIKMVQRLGNRWSLIAAQLPGRTDNEIKNYWHTNLKKKYHQQNVNAETEVSKSKDHQSPDEALPKPNNVDDVPFQNLPPTSQSTDSCTTSSIIISPTQFSITTTGRSSDDSKEKFDIPYEDEFAFADVMNESFWLEPYVVDISCYPSDVLVAEPDCFSPVPDVELWSHDHEYFA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01877 251 CDD SANT 69 112 IPR001005 -
Gma12g01877 251 SMART sant 66 114 IPR001005 -
Gma12g01877 251 SMART sant 13 63 IPR001005 -
Gma12g01877 251 MobiDBLite consensus disorder prediction 150 165 - -
Gma12g01877 251 CDD SANT 16 61 IPR001005 -
Gma12g01877 251 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma12g01877 251 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma12g01877 251 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma12g01877 251 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma12g01877 251 MobiDBLite consensus disorder prediction 119 165 - -
Gma12g01877 251 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 220 - -
Gma12g01877 251 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Gma12g01877 251 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma12g01877 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma12g01877 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma12g01877 251 Gene3D - 69 140 - -
Gma12g01877 251 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01877 Gma-Chr12 39434174 39436588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01877 1 218 MYB Transcription Factor Family AT1G06180 43.379 5.79e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g01877 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01877 K09422 - gmx:100810385 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01877 12 39434174 39436588 Gma12g01877 12 39434174 39436588 ECH
Gma13g02682 13 41495325 41504690 Gma12g01877 12 39434174 39436588 GST
Gma12g01877 12 39434174 39436588 Gma12g00936 12 9641997 9643461 PCT
Gma12g00935 12 9620869 9623223 Gma12g01877 12 39434174 39436588 PCT
Gma06g02677 06 50396257 50398354 Gma12g01877 12 39434174 39436588 PCT