Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01872 ATGAAGAACTGCGAGCTATGCAAGCTTCCAGCTAGGACCTTCTGCGAGTCGGACCAGGCTAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGAGCGAACTTCCTCGTCGCGAGACACACGCGCACGCTCCTCTGCCACGCGTGCCAGTCACTCACGCCGTGGAAGGCCTCCGGCTCTGCCCTCGGCAACACCGTCTCGCTGTGCCAGAGTTGCGCCGGCGGAACCACCGAACAGGGCCCAGAGAGCCAAGGAGGGAATGACGACGACGACATAGACACCGACGATGAGGATGACTACGATGACGATGGTGAGAGCGAGGAGAACGAGGTTGCAGCCGACGAGGAGGACGGAGACAACCAGGTTGTCCCTTGGTCCTCCGAGCCGCCGCCACCGTCCCCAAGCTCTTCCAGCAGCGAAGAGTCGATTAGCCGGTGCAACAACGTGGACGAGGTTTCGACCACATTGAAACGACGTCGCGAGAACGACGATTTTCAGGGTTCGAATTCGAATAATTGGAAATGTGAACGGAGCGAAGTGGACAGAGGATGTTGGTTGGCTCGGTTGCGGCGGAGAACCGCCGATGATGTGGCGGTTGAGCGACGGAGGGCTAGAGCGGCGTTTCCGTACGGTTGTTGTGATGATAGAGCATCTGAAGACGTTTGA 666 0.5916 MKNCELCKLPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHACQSLTPWKASGSALGNTVSLCQSCAGGTTEQGPESQGGNDDDDIDTDDEDDYDDDGESEENEVAADEEDGDNQVVPWSSEPPPPSPSSSSSEESISRCNNVDEVSTTLKRRRENDDFQGSNSNNWKCERSEVDRGCWLARLRRRTADDVAVERRRARAAFPYGCCDDRASEDV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01872 221 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Gma12g01872 221 MobiDBLite consensus disorder prediction 137 151 - -
Gma12g01872 221 MobiDBLite consensus disorder prediction 84 117 - -
Gma12g01872 221 CDD Bbox1_BBX-like 4 45 - -
Gma12g01872 221 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 221 - -
Gma12g01872 221 MobiDBLite consensus disorder prediction 73 174 - -
Gma12g01872 221 PANTHER - 1 221 - -
Gma12g01872 221 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Gma12g01872 221 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01872 Gma-Chr12 39373757 39375163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01872 2 118 C2C2-CO-like Transcription Factor Family AT4G27310 52.991 3.60e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma12g01872 zf-B_box 9.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01872 - - gmx:100809520 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01872 12 39373757 39375163 Gma12g01872 12 39373757 39375163 ECH
Gma13g02686 13 41569942 41571540 Gma12g01872 12 39373757 39375163 GST
Gma12g01872 12 39373757 39375163 Gma12g00927 12 9453183 9453785 PCT
Gma12g01872 12 39373757 39375163 Gma06g02681 06 50455554 50456718 PCT
Gma12g00927 12 9453183 9453785 Gma12g01872 12 39373757 39375163 PCT
Gma06g02681 06 50455554 50456718 Gma12g01872 12 39373757 39375163 PCT