Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01870 ATGAGAAGCAGTGATGAGGTTCTGTTCTCCTTCTTCCTTCTTCTTGCTTTGGTGTTATGCTTCCAACTCTGTTCCACTGGAGATACTTTGAAGGCTGGCCAAAAGATAACTCTGAACTCAATGGAGAACCTTGTTTCATCAAGTCGCACATTTGAGCTTGGCTTCTTTTCTTTAAATGATAGCAGCCGTGTTGTAAAAAGCTACTACTACTTGGGGATATGGTATCAGTTCAACCCACAAACAGTGGTATGGGTTGCCAATAGAGACAAGCCTGTTTTAGATTCTAGTGGTGTTTTTCGAATTGCAGAGGATGGAAATCTGGTGGTAGAAGGTGCGTCAAAAAGGCATTGGTCCTCTGTAATTGAAGCACCCTCGTCCACAAACAGAACACTGAAGCTCCTAGAATCAGGGAACCTAGTACTCATGGACGATAACTCGGGAACCAGTAATTACCTGTGGCAGAGTTTCGAGAACCCAACAGACACGTTTCTTCCTGACATGAAAATGGATGCAAGTTTAGCATTGACTTCATGGAGAAACCCCACTGACCCGGCACCTGGGAACTTCACCTTTCGACTGCTTCAAATTGATGAGAGACCAAACTACGCAGTGCTAATTAACCATTCACAACTTTACTGGACAGCTGATGGACTCGATGCAGAAATGATTCCCAAAGAAATACAGTTGAACGCAATAAGCTTTGGGTGGCCGCAACAATCAAGGCTAGTAATGAATTATAGCGGGGAGATACAATTTCTCGAGTTTAATGGAACGGAATGGGTTAAGAAATGGTGGAAGCCAGACCACAAGTGCGATATACGTGACTATTGCGGGAGCTTTGCCATCTGCAACAAAAATAACCGGATTCACTGCAAGTGTTTGCCTGGATTCATTCCCGGGCATGAAGGAGAATTCCCGCTCCAAGGGTGTAAAAGAAAATCAACATTATCGTGTGTCGACACGAACGTCATGTTCCTGAACTTAACCAGCATAAAAGTGGGTAACCCCCCAGAACAAGAAATCTCCATAGAAAAAGAGGAAGAATGTAAATCCTTTTGCCTTAACACCAACAAGTGTCCCGAGTCGCAATGCCAGGCGTATTCCTATACTGCGCCTTCATATGATCGTGGTTCCTACACATGCAAGATCTGGAAACAAGATTTATCTACTCTTGTAGAGGAGTACGATCGTGGACGTAATCTTTCTATCCTGCTCAAGACTTCTGATATAGCACCATCAATTGCAGCTGCAAAATTCTGTGAACCTTGCGGCACATATATTATTCCTTACCCGCTAAGCACTGGGCCAAACTGTGGAGACCCCATGTACAACAAGTTATACTGCAACAAATCAACAGGCCACGTTACATTCCTGATGCCAGGAGGAATATCGTACCCCGTTACTCGGATCGATGAAGATACCAGAACATTTTTCATTGAAACAGATGCTTCACATTCCTGTAGTTCCAGAAGAGATCAAAATAACACACCTAATATTCCATTTAATGTAGCTGATTGCATACAAGATGTTGTAATAAAAATCAATTGGCTACCAGCACCAGAACCTCCCTGTATTAAGCCTATAGACTGCAAGAAATGGTCTCATTCAACGTGCAGAACAAGTAAAGGAGGAACCAGGTGCCTTTGCAATCCAAACTATAAGTGGAATGACTCAACTATGAAATGTACCCAAGAGCCACCGAGAAATCATTCATCCAGAGGACTGCCATTGATTGTTACAATAATTTTAATATGCATTATTACTCTGGCATGCATAATGGTACCTGCAATTGTGTGGAGAAAGAAAAATGCCCATAAGGCTGatcgggcaagcacccaaattcaGGAGAGCTTGTACGAGAGTGAAAGACACGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAGGACATTGAAGGAATTGAAGTACCCTGTTATACTTATGCAAGCATTCTAGCAGCTACAGATAATTTCTCAGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGACATAGCTGTAAAGAGGCTTTCAAGTGTTTCCACTCAAGGCTTAGAGGAATTCAAGAATGAGGTTATTTTGATTGCAAAACTTCAGCATCGGAACCTTGTTAGACTCAGGGGCTATTGCATTAAAGGAGATGAAAAAATCTTACTTTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCGGACACGAACTTTACTCCTGGATTGGCCAATACGATTTGAGATAATCGTAGGCATTGCGCGAGGCATGTTGTATCTTCACCAAGACTCCAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACATTCTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGGGGAAAAGAAACTGAAGCATGTACAGGGAGAATAGTGGGAACCTATGGATACATGGCTCCAGAGTATGCCTTGGACGGATTCTTTTCAACCAAATCCGACGTTTTCAGCTTTGGAGTAGTCCTTCTAGAGATTCTTAGTGGAAAAAAGAACACTGGATTCTATCAGTCCAAGCAAATTTCTAGCCTTTTGGGTCATGCATGGAAGTTATGGACAGAGAATAAGCTACTGGATTTAATGGACCCATCTCTTTGTGAAACATGCAACGAAAATGAATTCATTAAGTGTGCAGTCATTGGACTCTTATGCGTACAAGATGAACCAAGTGATCGACCCACTATGTCAAATGTTTTGTTCATGCTCGACATAGAGGCAGCAAGCATGCCAATTCCCACGCAGCCAACCTTTTTTGTGAAAAAGCATCTTTCTAGCTCAGCTTCCTCTTCGAGCAAACCAGATATAGGTCAGTTTGAGAGCAGTTATCAAGAAGGTCGATAG 2925 0.4185 MRSSDEVLFSFFLLLALVLCFQLCSTGDTLKAGQKITLNSMENLVSSSRTFELGFFSLNDSSRVVKSYYYLGIWYQFNPQTVVWVANRDKPVLDSSGVFRIAEDGNLVVEGASKRHWSSVIEAPSSTNRTLKLLESGNLVLMDDNSGTSNYLWQSFENPTDTFLPDMKMDASLALTSWRNPTDPAPGNFTFRLLQIDERPNYAVLINHSQLYWTADGLDAEMIPKEIQLNAISFGWPQQSRLVMNYSGEIQFLEFNGTEWVKKWWKPDHKCDIRDYCGSFAICNKNNRIHCKCLPGFIPGHEGEFPLQGCKRKSTLSCVDTNVMFLNLTSIKVGNPPEQEISIEKEEECKSFCLNTNKCPESQCQAYSYTAPSYDRGSYTCKIWKQDLSTLVEEYDRGRNLSILLKTSDIAPSIAAAKFCEPCGTYIIPYPLSTGPNCGDPMYNKLYCNKSTGHVTFLMPGGISYPVTRIDEDTRTFFIETDASHSCSSRRDQNNTPNIPFNVADCIQDVVIKINWLPAPEPPCIKPIDCKKWSHSTCRTSKGGTRCLCNPNYKWNDSTMKCTQEPPRNHSSRGLPLIVTIILICIITLACIMVPAIVWRKKNAHKADRASTQIQESLYESERHVKGLIGLGSLEEKDIEGIEVPCYTYASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQDIAVKRLSSVSTQGLEEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRTRTLLLDWPIRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEACTGRIVGTYGYMAPEYALDGFFSTKSDVFSFGVVLLEILSGKKNTGFYQSKQISSLLGHAWKLWTENKLLDLMDPSLCETCNENEFIKCAVIGLLCVQDEPSDRPTMSNVLFMLDIEAASMPIPTQPTFFVKKHLSSSASSSSKPDIGQFESSYQEGR 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01870 974 SMART serkin_6 659 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01870 974 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 18 972 - -
Gma12g01870 974 ProSiteProfiles PAN/Apple domain profile. 318 408 IPR003609 -
Gma12g01870 974 SUPERFAMILY Protein kinase-like (PK-like) 642 930 IPR011009 -
Gma12g01870 974 ProSiteProfiles Bulb-type lectin domain profile. 29 154 IPR001480 -
Gma12g01870 974 Pfam S-locus glycoprotein domain 239 299 IPR000858 GO:0048544
Gma12g01870 974 Gene3D Phosphorylase Kinase; domain 1 633 734 - -
Gma12g01870 974 CDD B_lectin 37 159 IPR001480 -
Gma12g01870 974 SMART ntp_6 320 405 IPR003609 -
Gma12g01870 974 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 972 - -
Gma12g01870 974 Gene3D - 22 156 IPR036426 -
Gma12g01870 974 Gene3D Transferase(Phosphotransferase) domain 1 735 937 - -
Gma12g01870 974 CDD STKc_IRAK 665 931 - -
Gma12g01870 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Gma12g01870 974 ProSiteProfiles Protein kinase domain profile. 659 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01870 974 MobiDBLite consensus disorder prediction 952 974 - -
Gma12g01870 974 SMART blect_4 35 159 IPR001480 -
Gma12g01870 974 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 184 IPR036426 -
Gma12g01870 974 Pfam Protein tyrosine and serine/threonine kinase 662 927 IPR001245 GO:0004672|GO:0006468
Gma12g01870 974 Pfam D-mannose binding lectin 81 172 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01870 Gma-Chr12 39350933 39355041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01870 649 960 Receptor kinase-like Gene Family AT4G23140 57.585 1.07e-125 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma12g01870 PK_Tyr_Ser-Thr 6.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01870 - - gsj:114379027 1510.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01870 12 39350933 39355041 Gma12g01870 12 39350933 39355041 ECH
Gma13g02687 13 41578465 41583366 Gma12g01870 12 39350933 39355041 GST
Gma12g01870 12 39350933 39355041 Gma12g00926 12 9429249 9434258 PCT