Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01868 ATGAGAACTGATGAGGTTCTGTTCTCCTTTTCTCTTTTTTCTTTGGTGTTATGCTTCCAACTCTGTTCCACTGGAGATACTTTGAAGGCTGGCCAGAAGATAACTCTGAACTCATTGGAGAACCTTGTTTCATCTAACCGCACATTTGAGCTTGGTTTCTTTCCTTTAAGTGGTAGCAGCAGTGTTGTAAAAAGCTACTTGGGGATATGGTATCACGGGTTGGAACCACAAACAGTGGTATGGGTTGCCAATAGAGACAAGCCTGTTTTAGATTCTAGTGGTGTTTTTCGAATTGCAGAGGATGGAAATCTGGTGATAGAAGGTGCATCATCAGAAAGTTATTGGTCCTCTAAAATCGAAGCATCTTCGTCTACAAACAGAACAGTGAAGCTCCTAGAATCAGGGAACCTAGTACTTATGGACGATAACTTGGGAAGGAGTAATTACACGTGGCAGAGCTTTCAACACCCAACAGACACGTTTCTTCCTGGCATGAAAATGGATGCAAGTGTAGCATTGATTTCATGGAGAAACTCCACTGACCCGGCACCTGGGAACTTCACCTTTACGATGGCTCCAGAGGACGAGAGGGGAAGCTTCGCAGTGCAAAAGCTATCACAAATCTACTGGGACCTTGACGAACTCGACAGAGATGTTAATTCCCAAGTAGTATCTAATTTGTTGGGCAACACCACCACCCGGGGTACTGGGTCGCACAATTTTTCAGACAAAACCATCTTTACATCGAAGCCTTACAATTACAAGAAATCGAGGCTGCTAATGAATTCCAGTGGGGAGTTACAATTTCTCAAGTGGGATGAGGATGAAGGGCAATGGGAAAAGCACTGGTGGGGGCCAGCTGACGAGTGCGACATTCATGATTATTGCGGGAGCTTTGGCATATGTAACAGAAATAACCATATTGGCTGCAAATGTTTACCAGGATTCGCTCCCATTCCTGAGCAGTCTGAGGGAGAGCTCCAAGGACATGGGTGTGTGAGAAAATCAACATCGTGTATCAACACCGACGTCACATTCCTCAACTTAACCAACATAAAAGTAGGAAACGCAGACCATGAAATTTTTACAGAAACAGAAGCAGAATGCCAGTCCTTTTGCATTAGCAAGTGTCCCCTTTGCCAGGCATATTCATATAATAGGTCAACATACAGTGATCGCAGTCCCTTTACATGCAACATCTGGACACAGAATTTATCTTATCTTGTAGAGGAGTACGATCGTGGCCGTGATCTTTCTATCCTCGTTAAGAGATCAGATATAGCACCAACTGCAAAAACGTGTGAACCTTGCGGAACATATGAGATTCCTTATCCACTAAGCACTGGGCCAAACTGTGGAGATTCCATGTACAACAAGTTCAATTGTACCAAATCGACAGGCCAAGTTAACTTCATGATGCCCGAAGGAATATCATACCAGGTTACTAGGATCGAAGAAGATACCAGAACGTTTTTCATTCAAGCGGATGCTTCATATTCCTGTAGTTCCAGAAGAGATCAAAATAACACACCTAATTTTCCATTTAATGTAGTTGATTGCATACAAGATTTTGGAATAGTTAAATTCAGTTGGCAACCAGCACCAGAACCTCCCTGTAATAGGCCTATGGACTGCATGAATTGGCCCCATTCAACATGCAGAGAAACCAGGTGCCATTGTGATTTAAAATATAGGTGGAACAACTCTATCATGAGTTGCACCCAAGAAGAGCCGTCAAGAGAGCATTTAACCCACCGACTGACATTGATTCTTACAGTAACTCTTGGTTCCATGGCTATTCTGGCATGCATAACAGCATTTGTGCTTGTGCGGAGAAAGAAAAAAGCTCATAAGCTTGATCGGGCAAGCACCCAAATTCAGGAAAGTTTGTATGAGAGCGAAAAACGTGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGATATTGAAGGAATTGAAGTTCCCTGTTATACTTTTGCAAGCATTCTAGCGGCCACAGATAATTTCACCGATTCTAACAAGCTTGGAAGAGGTGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGACATAGCTGTAAAGAGGCTTTCAAGTGTTTCCACTCAAGGCTTAGAGGAATTCAAGAATGAGGTTATTTTGATTGCAAAACTTCAGCATCGGAACCTTGTTAGACTCAGGGGCTATTGCATTAAAGGAGATGAAAAAATCTTACTTTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCGGACACGAACTTTACTCCTGGATTGGCCAATACGATTTGAGATAATCGTAGGCATTGCGCGAGGCATGTTGTATCTTCACCAAGACTCCAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACATTCTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGGGGAAAAGAAACGGAAGCCAGTACAGAGAGAGTAGTGGGAACCTATGGATATATGGCTCCAGAGTATGCTTTGGATGGACTTTTTTCATTCAAATCCGATGTTTTCAGCTTTGGAGTAGTCCTACTAGAGATTCTTAGTGGGAAAAGAAACACGGGATTCTATCAGTCCAAACAAATTTCTAGCCTTTTGGGTCATGCATGGAAGTTATGGACAGAGAATAAGCTACTGGACTTAATGGACCCATCTCTTGGTGAAACATGCAACGAAAATCAATTTATTAAGTGTGCACTCATTGGGCTATTATGCATACAAGATGAACCAGGTGATCGACCTACTATGTCAAATGTTTTGTCAATGCTTGACATAGAGGCAGTAACCATGCCAATTCCCACGCCACCAACCTTTTTTGTGAACAAGCGTCATTCTAGCTCAGCTTCCTCTTCTAGCAAACCAGAAACAAGTCTGCAATTTGACAGCAGTTATCAAGAAGGTCGATAG 2964 0.4227 MRTDEVLFSFSLFSLVLCFQLCSTGDTLKAGQKITLNSLENLVSSNRTFELGFFPLSGSSSVVKSYLGIWYHGLEPQTVVWVANRDKPVLDSSGVFRIAEDGNLVIEGASSESYWSSKIEASSSTNRTVKLLESGNLVLMDDNLGRSNYTWQSFQHPTDTFLPGMKMDASVALISWRNSTDPAPGNFTFTMAPEDERGSFAVQKLSQIYWDLDELDRDVNSQVVSNLLGNTTTRGTGSHNFSDKTIFTSKPYNYKKSRLLMNSSGELQFLKWDEDEGQWEKHWWGPADECDIHDYCGSFGICNRNNHIGCKCLPGFAPIPEQSEGELQGHGCVRKSTSCINTDVTFLNLTNIKVGNADHEIFTETEAECQSFCISKCPLCQAYSYNRSTYSDRSPFTCNIWTQNLSYLVEEYDRGRDLSILVKRSDIAPTAKTCEPCGTYEIPYPLSTGPNCGDSMYNKFNCTKSTGQVNFMMPEGISYQVTRIEEDTRTFFIQADASYSCSSRRDQNNTPNFPFNVVDCIQDFGIVKFSWQPAPEPPCNRPMDCMNWPHSTCRETRCHCDLKYRWNNSIMSCTQEEPSREHLTHRLTLILTVTLGSMAILACITAFVLVRRKKKAHKLDRASTQIQESLYESEKRVKGLIGLGSLEEKDIEGIEVPCYTFASILAATDNFTDSNKLGRGGYGPVYKGTFPGGQDIAVKRLSSVSTQGLEEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRTRTLLLDWPIRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEASTERVVGTYGYMAPEYALDGLFSFKSDVFSFGVVLLEILSGKRNTGFYQSKQISSLLGHAWKLWTENKLLDLMDPSLGETCNENQFIKCALIGLLCIQDEPGDRPTMSNVLSMLDIEAVTMPIPTPPTFFVNKRHSSSASSSSKPETSLQFDSSYQEGR 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01868 987 Pfam D-mannose binding lectin 78 170 IPR001480 -
Gma12g01868 987 ProSiteProfiles Protein kinase domain profile. 671 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01868 987 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 985 - -
Gma12g01868 987 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 182 IPR036426 -
Gma12g01868 987 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 985 - -
Gma12g01868 987 ProSiteProfiles Bulb-type lectin domain profile. 27 152 IPR001480 -
Gma12g01868 987 Pfam S-locus glycoprotein domain 244 318 IPR000858 GO:0048544
Gma12g01868 987 MobiDBLite consensus disorder prediction 960 987 - -
Gma12g01868 987 Gene3D Transferase(Phosphotransferase) domain 1 747 948 - -
Gma12g01868 987 Gene3D Phosphorylase Kinase; domain 1 645 746 - -
Gma12g01868 987 SMART serkin_6 671 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01868 987 Pfam Protein tyrosine and serine/threonine kinase 674 941 IPR001245 GO:0004672|GO:0006468
Gma12g01868 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Gma12g01868 987 SMART blect_4 33 157 IPR001480 -
Gma12g01868 987 CDD B_lectin 35 157 IPR001480 -
Gma12g01868 987 SUPERFAMILY Protein kinase-like (PK-like) 656 976 IPR011009 -
Gma12g01868 987 SMART ntp_6 341 422 IPR003609 -
Gma12g01868 987 ProSiteProfiles PAN/Apple domain profile. 339 425 IPR003609 -
Gma12g01868 987 Gene3D - 20 155 IPR036426 -
Gma12g01868 987 CDD STKc_IRAK 677 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01868 Gma-Chr12 39326212 39330402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01868 661 982 Receptor kinase-like Gene Family AT4G23140 55.183 6.56e-125 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma12g01868 PK_Tyr_Ser-Thr 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01868 - - gmx:100807185 2008.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01868 12 39326212 39330402 Gma12g01868 12 39326212 39330402 ECH
Gma12g00926 12 9429249 9434258 Gma12g01868 12 39326212 39330402 PCT