Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01865 ATGTTAGCGAAAACCCATAACAAAGGGGATGGATCTAAGTCCCTGGCTAAGATACTGGCAAAATGGAAAGAATATAATGCCCAGATTGATTCCAGCAGTGATGCGGATAAGCCAGTTCGCAAAGTTCCTGCCAAGGGATCGAAGAAGGGGTGCATGAAAGGTAAAGGGGGCCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCAAACAGAGGCAATAGGCTTTGGCTAGGTACTTTCCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCGGCCAGGGCAATGTACGGTTCCTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAAGAATCTTCCAAAGATTCTCCGGTTGCGAATCATTGTGGTTCGTCAATGGCAGTGTCTGCAAACGAGTCCATGATTTCACCAAGTAACTCGGGGGTAGGTGCAGAAGATGATGTTGATATGGAGCCCATTTCCTTATCCTTAACTGTAAAGCATGAGAATGGGGAAGGTGAATCGGGGATAAGTTCTTCCCCTCCTTCCCCATGA 594 0.4832 MLAKTHNKGDGSKSLAKILAKWKEYNAQIDSSSDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPVANHCGSSMAVSANESMISPSNSGVGAEDDVDMEPISLSLTVKHENGEGESGISSSPPSP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01865 197 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gma12g01865 197 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Gma12g01865 197 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gma12g01865 197 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gma12g01865 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 169 - -
Gma12g01865 197 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Gma12g01865 197 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Gma12g01865 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 169 - -
Gma12g01865 197 MobiDBLite consensus disorder prediction 30 59 - -
Gma12g01865 197 MobiDBLite consensus disorder prediction 149 197 - -
Gma12g01865 197 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Gma12g01865 197 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01865 Gma-Chr12 39288057 39289953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01865 8 132 AP2-EREBP Transcription Factor Family AT2G40340 56.944 7.85e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma12g01865 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01865 - - gmx:100527471 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01865 12 39288057 39289953 Gma12g00920 12 9337758 9338387 PCT
Gma12g01865 12 39288057 39289953 Gma06g02686 06 50511169 50513325 PCT
Gma12g00920 12 9337758 9338387 Gma12g01865 12 39288057 39289953 PCT
Gma06g02686 06 50511169 50513325 Gma12g01865 12 39288057 39289953 PCT