Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01860 ATGCACGTCACGTCGTCACAAAGCCACATGAAAGCCGAGCTAAAGGGCACGACGTCCATTTCCTTTCAAAACCCTACCACCACTCTCTTCAACAACCCTCTCTCGGGAGCACTCAAAGGGTGCCTCGGAAGCCTCGATGGGGCATGTATTGAGAAGCTCTTGCTCCACTGTGCCAGTGCTTTGGAGAGCAATGACGTCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACTAACCAAAGGCTCACCTCGTGGTTCCTAAGGGCCTTAATCTCCAGGGCTTCAAGAATTTGCCCCACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGTTGATGAGCGTCACCGAGCTTGCCGGGTATGTGGATCTAATTCCTTGGCATAGGTTTGGTTATTGTGCATCCAACAATGAGATTTACAAAGCAATAACGGGGTTCCAAAGGGTGCATATTGTAGATTTTAGCATAACTCATTGTATGCAATGGCCTACTTTTATAGATGCTTTAGCAAAAAGGCCCGAAGGACCCCCTTCACTTAGAATCACGGTTCCATCTTGTAGACCACATGTACCCCCCTTGGTCAATATATCAATACATGAAGTTGGGTTACGTTTAGGAAATTTTGCTAAGTTCAGAGATGTCCCTTTTGAATTCAATGTTATAGGAAATACAGGACCATTAACAACAGCGGAATTGAGTGATGAATCAACTAATTTTCACTTTGAAGCAATGTTAAGTCTCTTGAATCCTACCATGCTAAACCTTAGGGAAGATGAGGCTTTGGTCATAAACTGCCAAAATTGGCTACGCTATTTGTCTGATGATAGAAAGGGAATTAGCCGCCAAAGTCTGTCGCTTAGGGATGCTTTTTTGAATATAATCAAAGGTCTTAACCCCCGGATTGTGCTCTTGGTTGATGAAGATTGTGATCTTAGTGCATCAAGTCTCACATCAAGAATAACCACCTGTTTTAACCATATGTGGATACCCTTTGATGCATTGGAGACTTTTTTGCCCAAAGATAGTTGTCAGAGGTCAGAGTTTGAATCCGACATAGGCCAGAAGATTGAGAACATCATAAGCTACGAAGGGCACCAAAGAATAGAGAGGTCGGAATCTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTGGGCTACCTCAGTGTTCCATTTTGTGATGAAACTGTTAGGGAAATAAAAGGTTTGCTAGATGAGCATGCTAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGTTAGTTCTCACGTGGAAAGGAAACAGCTGTGTGTTTGCGACAGCTTGGGTCCCTTGTGAAATGAGGGATCATATCGGCATTGATGCAGGCCTGTCTTAA 1383 0.4447 MHVTSSQSHMKAELKGTTSISFQNPTTTLFNNPLSGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAITGFQRVHIVDFSITHCMQWPTFIDALAKRPEGPPSLRITVPSCRPHVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTTAELSDESTNFHFEAMLSLLNPTMLNLREDEALVINCQNWLRYLSDDRKGISRQSLSLRDAFLNIIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHMWIPFDALETFLPKDSCQRSEFESDIGQKIENIISYEGHQRIERSESGVQMSQRMKNVGYLSVPFCDETVREIKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEMRDHIGIDAGLS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01860 460 PANTHER OS05G0500600 PROTEIN 11 446 - -
Gma12g01860 460 ProSiteProfiles GRAS family profile. 41 445 IPR005202 -
Gma12g01860 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 446 IPR005202 -
Gma12g01860 460 Pfam GRAS domain family 51 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01860 Gma-Chr12 39242230 39243612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01860 33 446 GRAS Transcription Factor Family AT3G49950 45.390 9.81e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma12g01860 GRAS 3.1e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01860 - - gmx:100805056 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01860 12 39242230 39243612 Gma12g01860 12 39242230 39243612 ECH
Gma13g02698 13 41656942 41658345 Gma12g01860 12 39242230 39243612 GST