Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01855 ATGGACATGAATTCCTCAGGTGGTGCCTGCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCAGTTGGGGGCCCCAGAGTTACAACTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTTAATGAGAGGTTTCTGGAATTGAGTTCGATCTTGGAGCCTGGTAGACAGCCCAAAACAGACAAAGTTGCATTATTAAGCGATGCGGCTCGAGTGGTAATCCAATTGAGAAATGAAGCCGAGAGGCTGAAGGAAATGAATGATGAATTACAGGCAAAAGTTAAAGAATTGAAGGGTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGGAAGAGAAAGAAAAGTTGGAGAAGCAAGTGAAACTGACAAATATACAACCCAGCTTCCTACCTCAAGCCCCAGATGCTAAAGGGCAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACTTCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 696 0.4468 MDMNSSGGACGWLYDYGFDIPVAGSDFMASDSGGFSWGPQSYNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESCASGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKVALLSDAARVVIQLRNEAERLKEMNDELQAKVKELKGEKNELRDEKNRLKEEKEKLEKQVKLTNIQPSFLPQAPDAKGQVGSHKLIPFIGYPGIAMWQFMSPAAVDTSKDHLLRPPVA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01855 231 PANTHER BHLH TRANSCRIPTION FACTOR 1 231 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gma12g01855 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 150 IPR036638 GO:0046983
Gma12g01855 231 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Gma12g01855 231 SMART finulus 82 133 IPR011598 GO:0046983
Gma12g01855 231 CDD bHLH_AtILR3_like 81 156 - -
Gma12g01855 231 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 231 - -
Gma12g01855 231 Coils Coil 117 179 - -
Gma12g01855 231 Gene3D - 69 126 IPR036638 GO:0046983
Gma12g01855 231 Gene3D arf6 gtpase in complex with a specific effector, jip4 127 178 - -
Gma12g01855 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01855 Gma-Chr12 39178004 39180310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01855 34 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.938 1.20e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g01855 HLH 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01855 - - gmx:100806838 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01855 12 39178004 39180310 Gma12g01855 12 39178004 39180310 ECH
Gma13g02703 13 41709586 41711606 Gma12g01855 12 39178004 39180310 GST