Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01845 ATGGACTCCATTTGCCCTATTGGGTTGCAGTGTGCCACTGAAATCTCTGCTCTTCTCTCTCCTCCCTCTCCTCTTCAAGTTCAGAAATATTATCACGACCTTTTGACTGCAAGAGGGTGCAGTGGTATCAAAGTCAAACAGGATGGCAACTTTGGAAAAGGTTTATATGCAGACATGGACTTCAAAGAGGGGGAACTGGTTCTGAAGGACCCCATGCTTGTAGGAGCTCAACATCCCCTCAACAAGATTGATTGTTTGGTGTGTAGCTTCTGCTTTTGTTTTATTGGTTCCATAGAACTTCAAATTGGAAGGAGGCTTTACATGCAACATCTAAGGGCCAATGAGAGTCATGGTTGTGAAGTGGGAAGCTCTTCAAAACACTGTCATGAAATGGATTCTTCTGATGAAGAGGAGAGCACACAACAATGTACTTCTGGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTATTGTGGAATCGTTAATGAACGGCCAATTGGTGTTGCCTTTCTCCGAGAAGTTTTCCTTGCCGCCAGCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGGATCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTCTGATTCAGCTCGTAGAGAGGCACTTCTTAAATTCATCAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGCCATTTCTTCTACCATGCTAATGTACCGCAAATTAAAAGCAGTCAGTCTTGAAGAGCAAATGAAACACAATACATCCTGTGTTTCGAACCACTGTAACTTATCTATTCTTTTGGAAGCTTGGAAGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGACTGTATTGCTTTGCCAGATGATGTTGATTCTTCTGATGAAGCTTCATTCAGGCTGCAAATAAAAATGTTGGCATTTGAGTCTCTCCAACTTCTTAAGACAGCCATATTTGACAAAGAATGTGAGCCATTATTCTCCCTTGAAATCTATGGAAATATCATCGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATATATTGATGATCTGACATATCCTAATAAGGAAGAAGCTGAGAAAATTACGCAACCGGTTCTGGATGCTCTTGGTGAAGAGTATTCTATTTATTGCGAAGGAACTGCATTTTTTCCTTTGCAAAGCTGCTTGAACCATTCATGTTGTCCTAATGCCAAGGCTTTCAAAAGAGAGGAGGATAAAGATGGTCAAGCAACAATAATTGCACAGAGGTCCATTTGTAAAGGAGAAGAGATAACCATATCATATGTTGATGAGGACCTTACATTTGAAGAGCGACAAGCATCCCTTGCAGATTATGGTTTCAGATGCAGGTGTTCAAAGTGCATTGAAGAAGAGCCATAA 1455 0.4151 MDSICPIGLQCATEISALLSPPSPLQVQKYYHDLLTARGCSGIKVKQDGNFGKGLYADMDFKEGELVLKDPMLVGAQHPLNKIDCLVCSFCFCFIGSIELQIGRRLYMQHLRANESHGCEVGSSSKHCHEMDSSDEEESTQQCTSGSSKTKVPLPEGIVESLMNGQLVLPFSEKFSLPPAVPCPGGCGEAYYCSMSCAEADWGSSHSLLCTGESSDSARREALLKFIKHANETNDIFLLAAKAISSTMLMYRKLKAVSLEEQMKHNTSCVSNHCNLSILLEAWKPISMGHKRRWWDCIALPDDVDSSDEASFRLQIKMLAFESLQLLKTAIFDKECEPLFSLEIYGNIIGMFELNNLDLVVASPVEDYFLYIDDLTYPNKEEAEKITQPVLDALGEEYSIYCEGTAFFPLQSCLNHSCCPNAKAFKREEDKDGQATIIAQRSICKGEEITISYVDEDLTFEERQASLADYGFRCRCSKCIEEEP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01845 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Gma12g01845 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 483 IPR044237 GO:0008168
Gma12g01845 484 SUPERFAMILY HIT/MYND zinc finger-like 185 211 - -
Gma12g01845 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Gma12g01845 484 Gene3D SET domain 376 483 IPR046341 -
Gma12g01845 484 SUPERFAMILY SET domain 41 479 IPR046341 -
Gma12g01845 484 Gene3D - 122 215 - -
Gma12g01845 484 MobiDBLite consensus disorder prediction 123 151 - -
Gma12g01845 484 CDD SET_SMYD 390 479 - -
Gma12g01845 484 Pfam MYND finger 182 210 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01845 Gma-Chr12 39123179 39129784 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma12g01845 SET 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01845 - - gmx:100803651 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01845 12 39123179 39129784 Gma12g01845 12 39123179 39129784 ECH
Gma13g02716 13 41780583 41785153 Gma12g01845 12 39123179 39129784 GST