Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01835 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATTGGAAGAAACGGAACCGTTGGTGGCTTTGGATTATCTTCAGGGCTCTCTCTTGGCCATATTGAAAACCATAAGGCTTCGGAATCTCAAAGATCTGTAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAGCTCCACCCACTGGACATGCCTCAGAACACTTCAGAGAGCGATGTCCCTAGAATCCGTGAAGATGACTTTGACAGTGCCACCAAGTCAGGTAGTGAAAATCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCGTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAACATGAACGTCATGAGAACACACAGCTGAGAACTGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTTCAGGGAAGCTCTCGGCAATGCCTCGTGTCCTAACTGTGGTGGACCAACCGCTATAGGGGAAATGTCATTCGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTGAGAGAAGAGATTGATAGGATATCTGCCATTGCTGCAAAGTATGTTGGGAAGCCTGTGGTGAGCTATCCACTTGTTTCTCCTTCATCTGTTCCTCCTCGTCCACTAGAACTTGGGGTTAGTGGTGGTTTTGGTGGCCAACCTGGAGGCATTGGAGGGGACATGTATGGTGGAGCTGCAGGAGATCTTCTAAGGTCAATAAGTGGACCTACTGAAGCTGATAAGCCAATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCGCAAATGGGTGAGCCTCTTTGGTTGACTACCCTGGATGGCACCACTGTGCTCAACGAGGATGAGTACATCAGGTCTTTTCCTCGAGGGATTGGTCCTAAACCCGTTGGTTTCAAGTGTGAAGCTTCGAGGGAAACTGCTGTTGTTATCATGAACCATGTTAACCTTGTTGAGATCCTCATGGACGTGAATCAATGGTCCACGGTGTTCTCTGGCATTGTCTCAAGAGCAATGACTTTGGAAGTGCTATCAACAGGGGTGGCGGGGAATTACAACGGTGCATTGCAAGTGATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAGCACGGTGACGGAACTTGGGCAGTAGTGGACGTGTCCTTGGATAATTTGCGTCCTAGTCCTTCAGCCAGATGTAGAAGAAGGCCCTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCTAAGGTCATATGGGTTGAGCACGTAGAAGTGGATGACAGAGGTGTCCATAATCTATACAAGCAGCTTGTTAGCTCGGGGCATGCATTTGGTGCAAAACGTTGGATTGCAAACTTGGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTAATAACAAACCCAGATGGGAGGAAGAGCATGTTGAAACTGGCTGAGAGAATGGTCATAAGCTTTTGTGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTTTCTGGAACTGGTGCCGATGATGTAAGGGTCATGACACGTAAGAGTGTAGATGACCCAGGAAGGCCTCCTGGCATCGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCTGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTTGTTCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACGGGATCTTTTGTGATATATGCTCCTGTAGATATTGTGGCAATGAATGTGGTTCTGAATGGAGGGGACCCGGACTACGTGGCCCTTCTCCCTTCAGGATTTGCTATACTCCCAGATGGGACCACTGCACATGGAGGTGGCATTGGTGACATTGGACATGGTGGTTCTCTCTTGACTGTGGCATTTCAAATATTGGTTGATTCGGTTCCAACGGCAAAGCTTTCTCTTGGATCAGTTGCTACTGTTAACAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGA 2346 0.4783 MPAGIMIPARNMPSMIGRNGTVGGFGLSSGLSLGHIENHKASESQRSVEMFQPNLMEAGQLHPLDMPQNTSESDVPRIREDDFDSATKSGSENLEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLVSPSSVPPRPLELGVSGGFGGQPGGIGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTVLNEDEYIRSFPRGIGPKPVGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEVQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIANLDRQCERLASAMATNIPTVDVGVITNPDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGDIGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01835 781 Pfam START domain 304 522 IPR002913 GO:0008289
Gma12g01835 781 CDD START_ArGLABRA2_like 298 521 - -
Gma12g01835 781 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Gma12g01835 781 SUPERFAMILY Bet v1-like 294 524 - -
Gma12g01835 781 Gene3D - 351 522 IPR023393 -
Gma12g01835 781 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Gma12g01835 781 Gene3D - 96 183 - -
Gma12g01835 781 ProSiteProfiles START domain profile. 294 525 IPR002913 GO:0008289
Gma12g01835 781 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Gma12g01835 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 778 IPR042160 -
Gma12g01835 781 SMART START_1 303 522 IPR002913 GO:0008289
Gma12g01835 781 MobiDBLite consensus disorder prediction 82 117 - -
Gma12g01835 781 CDD homeodomain 109 167 IPR001356 GO:0003677
Gma12g01835 781 Coils Coil 172 192 - -
Gma12g01835 781 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 63 778 - -
Gma12g01835 781 SMART HOX_1 107 170 IPR001356 GO:0003677
Gma12g01835 781 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Gma12g01835 781 SUPERFAMILY Bet v1-like 541 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01835 Gma-Chr12 39021822 39029036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01835 50 781 Homeobox Transcription Factor Family AT1G05230 78.969 0.0 1167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma12g01835 START 1.8e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01835 K09338 - gmx:100809556 1445.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01835 12 39021822 39029036 Gma12g01835 12 39021822 39029036 ECH
Gma13g02729 13 41875663 41881371 Gma12g01835 12 39021822 39029036 GST
Gma12g01835 12 39021822 39029036 Gma12g00894 12 8841636 8848161 PCT
Gma12g01835 12 39021822 39029036 Gma06g02708 06 50761129 50767519 PCT
Gma12g00894 12 8841636 8848161 Gma12g01835 12 39021822 39029036 PCT
Gma06g02708 06 50761129 50767519 Gma12g01835 12 39021822 39029036 PCT