Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01828 ATGGCCAGAACAGTCTCCAACAGCAATGAAACAGCAGCTAAAGAGGAGggtgaggtgagaaatggcgtaaggaaggggccatggaccccagaagaagacgcgatcctgatggactacgtgaagaagcacggcgaagggaattggaactctgtgcagaagaattctggcttgttaaggtgtggcaaaagttgcagactcagatgggccaaccatctcagacctaatctcaagaaaggtgcattctctcaagaagaagaacaagtcatcatcgaccttcattccaagcttggaaacaaatgggcacgaatggcagcacagttacctggtaggaccgacaatgaaataaagaacttttggaacaccagaatgaaaaggcgtcagagagcagggttacccctttatccTCCTGAAGTCCATGCAGAAGCCACTTCATACCTTCTACAACACCACCGTTACTTGGAACAACAACAACAACAACAACCTCATTCATCTTCATCATTTTCTCTTCTCCTATCTTCATGTTACCCCAATAAACTCAATGATCCAAACCAAACCCATCATCATTCCAATGCAAATCTTCTGCAAAGCCAACCTGATCATTCTGCCAACCGTTACATCAATCCAAGCCAGCAATTCAAGTTTTCCAATGAAAACAGTGGAAGCAATGGAAATTTTGCTTTTCCATTGTCCCCTCTTTCTCCATATGGATCCTCCTCCTCCACCCTTCTTAACCACAGTTTTGGTGGTGGTGATCATGGCTTCATAGCAGGATCTCCCTATGAACCCTTTTCTTTGGTGCAAGGCTCCACCACTGACATCTCTTCCAACCAGACACCAACCCCTGCTTCATCCTATGCTAGTGGTGTCGATGGCTTGATGGGAGCTTCAAGCATGGTTAATAACAACAATAACAATAATGATTACTATGAAGTTGCACCATTGTCTCCTCCTCAAGGAAACAGTGGCCTGTTGGATGCTCTAGTGATGGAGGCTCAGGGACTTTCTCACAATGAGAAGTCAAAGAGTGAGGAGGACCCAAACTTAGCTGGGAAGTTATCTTGTAAGAGAAAGAAAATGGAATATGCTGAGGAGGGAGGCACTGTGCCAGCCATGAAGAAGAACAGTGGCAACAGTACTACTAATGAAAGCCAGAGGGATGATGATATTAGCTCCTCTCAATTGGCAAAAGGGAAGGAACAAATTGGCGAGGACCCGTTGGAAGAGATGAATGGGATGGACGATGACCTGGTTAGCCTGCTCAACCATTTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGTAGAGGGGGAAATCAGTCATTGGGACTTGAAAATCAGCCCAAAGCTTCACTACCAGATCCTGCTGATCAAGAACATGCTTGGACTCTCGGAACTTGCTGGAACAACATGCCTCGCATATGCTAA 1425 0.3389 MARTVSNSNETAAKEEGEVRNGVRKGPWTPEEDAILMDYVKKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSQEEEQVIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVHAEATSYLLQHHRYLEQQQQQQPHSSSSFSLLLSSCYPNKLNDPNQTHHHSNANLLQSQPDHSANRYINPSQQFKFSNENSGSNGNFAFPLSPLSPYGSSSSTLLNHSFGGGDHGFIAGSPYEPFSLVQGSTTDISSNQTPTPASSYASGVDGLMGASSMVNNNNNNNDYYEVAPLSPPQGNSGLLDALVMEAQGLSHNEKSKSEEDPNLAGKLSCKRKKMEYAEEGGTVPAMKKNSGNSTTNESQRDDDISSSQLAKGKEQIGEDPLEEMNGMDDDLVSLLNHFPLEMPMPEWYRRGGNQSLGLENQPKASLPDPADQEHAWTLGTCWNNMPRIC 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01828 474 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Gma12g01828 474 MobiDBLite consensus disorder prediction 13 27 - -
Gma12g01828 474 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 449 - -
Gma12g01828 474 MobiDBLite consensus disorder prediction 336 354 - -
Gma12g01828 474 MobiDBLite consensus disorder prediction 178 203 - -
Gma12g01828 474 MobiDBLite consensus disorder prediction 335 354 - -
Gma12g01828 474 MobiDBLite consensus disorder prediction 436 456 - -
Gma12g01828 474 CDD SANT 80 121 IPR001005 -
Gma12g01828 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Gma12g01828 474 CDD SANT 27 72 IPR001005 -
Gma12g01828 474 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Gma12g01828 474 Gene3D - 80 166 - -
Gma12g01828 474 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Gma12g01828 474 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Gma12g01828 474 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Gma12g01828 474 SMART sant 24 74 IPR001005 -
Gma12g01828 474 SMART sant 77 125 IPR001005 -
Gma12g01828 474 MobiDBLite consensus disorder prediction 1 27 - -
Gma12g01828 474 MobiDBLite consensus disorder prediction 371 397 - -
Gma12g01828 474 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 449 - -
Gma12g01828 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Gma12g01828 474 MobiDBLite consensus disorder prediction 360 408 - -
Gma12g01828 474 Gene3D - 25 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01828 Gma-Chr12 38891699 38895072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01828 19 474 MYB Transcription Factor Family AT2G32460 35.849 2.03e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g01828 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01828 K09422 - gmx:100798860 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01828 12 38891699 38895072 Gma12g01828 12 38891699 38895072 ECH
Gma13g02735 13 41968437 41971814 Gma12g01828 12 38891699 38895072 GST