Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01821 ATGGAGTGGACTAGAGGCTTCATCATAGGACGTGGGTCATCGGCCACCGTTTACACCGCCACCTCATCCCACTCCTCCACCGTGGCGGCCGTCAAGTCGGCGGAGCTAACACTATCAAATTCAGAGCAGCTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCTCACATAGTTACCTACAAAGGCTGCAACATAACAGAGGACAACAACACCCTTTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGTACTCTCTCTCAGGAAAGTCACCGGCACGGTGGCCGCCTCAGCGAACCGGCCACCGTTTACTACACGCGACAAGTCCTGCAGGGGCTACAGTACTTGCACAATAAGGGTGTTGTGCATTGCGATATTAAAGGTGGCAACATTTTGATTGGTGAAGATGGGGCCAAGATTGGGGACTTTGGATGTGCCAAGTTTGCCAATGATTCCTCGGCGGTGATCGGTGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAGGGGTACCCTGCTGATGTGTGGGCACTTGGGTGCACTGTGCTTGAAATGGCCACTGGTTTTGCACCATGGCCTAATGTGGAAGACCCTGTCACAGTGTTGTACCGTGTTGCATATTCCGATGATGTTCCAGAGATTCCTTGTTTTCTGTCTGAGGAAGCAAAGGATTTCTTGGGGAAGTGTTTCAGGAGGAATCCTAAGGAGAGGTGGAGTTGTGGTCAGCTTCTGAAGCATCCGCTTCTTGGGGAATTCAGTTCCAATGATAAGAAAATTCAGGAATCTAATTCGTGTTCTCCAACAAGTATTCTTGAGCAGGGCTTTTGGAATTCTATGGAAGAGGCAGAGGTAGAGTGTGTCTCTGCCTCTGCCAATGTGGTTCAGGTTAAAAGTTTTGAGGATTCTCCCAGGGGTAGGATCAGAAGGCTTGCTTCGTGTTCAGGGGATCCAATTGGGGAATTGGACGATGAAAATTGGATCACAGCAAGAGGCAGTGAAATGGGTGCTTCTTCAAGTTGTGATGGGTTGGATTTGGATGTTAATAGTAGAATTAGTGGTTATTTTTGTGATGATTATTATAAATGTAGGGATGTTAGTGTTGTAGTTGATAGTTTCAATTTTGAGAGAGGCAATTCTGAGAAGCTTCTCCCATTAACATTGGATTTTTTATAA 1191 0.4794 MEWTRGFIIGRGSSATVYTATSSHSSTVAAVKSAELTLSNSEQLQREQRILSSLFSPHIVTYKGCNITEDNNTLWFNLFMEYMPFGTLSQESHRHGGRLSEPATVYYTRQVLQGLQYLHNKGVVHCDIKGGNILIGEDGAKIGDFGCAKFANDSSAVIGGTPMFMAPEVARGEEQGYPADVWALGCTVLEMATGFAPWPNVEDPVTVLYRVAYSDDVPEIPCFLSEEAKDFLGKCFRRNPKERWSCGQLLKHPLLGEFSSNDKKIQESNSCSPTSILEQGFWNSMEEAEVECVSASANVVQVKSFEDSPRGRIRRLASCSGDPIGELDDENWITARGSEMGASSSCDGLDLDVNSRISGYFCDDYYKCRDVSVVVDSFNFERGNSEKLLPLTLDFL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01821 396 PANTHER MAP KINASE KINASE KINASE 1 359 - -
Gma12g01821 396 SUPERFAMILY Protein kinase-like (PK-like) 4 262 IPR011009 -
Gma12g01821 396 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01821 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Gma12g01821 396 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Gma12g01821 396 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01821 396 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 359 - -
Gma12g01821 396 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Gma12g01821 396 CDD STKc_MAPKKK 2 255 - -
Gma12g01821 396 Pfam Protein kinase domain 8 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01821 Gma-Chr12 38826081 38827295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01821 1 285 MAP Kinase Kinase Kinase AT2G32510 52.397 1.78e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma12g01821 Pkinase 1.9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01821 K20716 - gmx:100797801 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01821 12 38826081 38827295 Gma12g01821 12 38826081 38827295 ECH
Gma12g01821 12 38826081 38827295 Gma07g02527 07 47604855 47606538 ECH
Gma13g02742 13 42031848 42033044 Gma12g01821 12 38826081 38827295 GST
Gma12g01821 12 38826081 38827295 Gma12g00868 12 8459903 8460961 PCT
Gma12g01821 12 38826081 38827295 Gma06g02730 06 51083845 51085170 PCT
Gma12g00868 12 8459903 8460961 Gma12g01821 12 38826081 38827295 PCT
Gma06g02730 06 51083845 51085170 Gma12g01821 12 38826081 38827295 PCT