Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01801 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACGGTTAGATGTGGACACTGTGCCAATTTGCTGACAGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTACTCAGCGATTTTCTACCGTTGGTAAGTTACAGAGACAGCATCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAGTGCAAATCATTTGAGACTGTAGACCATGAGCAGCAACCTAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAAGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTAGACGGCAATAAGCAAGCAAAGTTGGACCAGGGTGATGTGAAAAATGAGGTTGATCAAATTTCCTAA 567 0.4321 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLTVNMGASLQTFPSQDTTQRFSTVGKLQRQHLSVQEACSKELGSSSKCKSFETVDHEQQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDVKNEVDQIS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01801 188 SUPERFAMILY HMG-box 110 158 IPR036910 -
Gma12g01801 188 MobiDBLite consensus disorder prediction 100 120 - -
Gma12g01801 188 PANTHER PROTEIN YABBY 6-RELATED 3 180 IPR006780 GO:0007275
Gma12g01801 188 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 180 - -
Gma12g01801 188 Gene3D High mobility group box domain 102 184 IPR036910 -
Gma12g01801 188 Pfam YABBY protein 7 165 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01801 Gma-Chr12 38617403 38627170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01801 1 177 C2C2-YABBY Transcription Factor Family AT1G08465 64.444 1.35e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gma12g01801 YABBY 3.6e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01801 K25796 - gmx:100785458 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02757 13 42147499 42157253 Gma12g01801 12 38617403 38627170 GST
Gma12g01801 12 38617403 38627170 Gma12g00854 12 8217381 8226034 PCT
Gma12g01801 12 38617403 38627170 Gma06g02742 06 51209221 51216754 PCT
Gma12g00854 12 8217381 8226034 Gma12g01801 12 38617403 38627170 PCT
Gma06g02742 06 51209221 51216754 Gma12g01801 12 38617403 38627170 PCT