Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01785 ATGCTGTATGAAACTGATTATACAATGACAGAAATTGAAATTCCTCAGTTTTTTCTTTGTCCTATTTCACTTCAGATCATGAAGGACCCTGTGACAACCGTTACGGGGATAACATACGACAGAGAAAGCATCGAGAAATGGTTGCTAAAAGCGAAAGATTGCACTTGTCCAATCACAAAGCAACCATTGCCACGAAGCCCAGAGTTCTTAACCCCAAACCACACACTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCAAATGAAGCCAATGGCGTAGACCAAATTCCAACCCCGAAATCCCCTCTTAGCAATTCCAACGCTGAGAAGCTCGTGAAGGATCTCGAAGTTTCTTCTCGTTTTCAAAAGGCGTTGGAGAAATTGCACGCTCTTGCAATGGAGAACGAAAGGAACAGAAGGTGCATGGCTTCTGCGGGTGTAGCAGAAGCTATGGTGCACGTGATCACAAAGATTTTCAAGCAAGGTAACAAAACGACGCCGTGCGTTGAAGAAGCTCTTAGAATTCTTCGTTTGCTTTGGAGCAGTGCCAATATGGTCGACAGCAGCAACAACAACAACAACATTAAGCGCATGGTGGGTGAGAACTTTGACTTTCTCAACTCTTTGACTTGGGCTTTGCAGCTTCAAACCAAGAACAACGTCAAATTAACAAACGAAGCAATGCCAATATTGAAACAGGTAATTGAAGCCAAAGACTCAACCGCTTTAGGGAACTTGAAGCTTGAATTCTTCAAAGTTGTTGTGAGTGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTGTTAAATCCGCGTTGCATGTTCTTATAGAAACGTGTCCTTTGGGGAGAAACAGAATGAAGATAGTTGAAGGAGGTGCAGTGATTGAACTCATTGAGCTTGCACTTGAAAAACCAGAAAAGAATATGACAGAACTCGTATTTATTCTCTTGGCGAATCTTTGTTCTTGTGCTGACGGGAGAGAACAGTTTCTGCAGCATGCTGCAGGCATTGCTGTGGTTTCTAAGAGGATCCTTAGGGTTTCACCAACCACCAATGATCGAGCTCTTCATATATTTTCCTTGGTTTCCAAGTTCTCGGCGTCGAATGAGGTTGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGTTACACTCCAAAACATGGAACAATTCTCCCTGTATTCAAGTGTATTTGTTAACCAGATTCCATAGGTGA 1281 0.4317 MLYETDYTMTEIEIPQFFLCPISLQIMKDPVTTVTGITYDRESIEKWLLKAKDCTCPITKQPLPRSPEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNSNAEKLVKDLEVSSRFQKALEKLHALAMENERNRRCMASAGVAEAMVHVITKIFKQGNKTTPCVEEALRILRLLWSSANMVDSSNNNNNIKRMVGENFDFLNSLTWALQLQTKNNVKLTNEAMPILKQVIEAKDSTALGNLKLEFFKVVVSVMKNRELSQQAVKSALHVLIETCPLGRNRMKIVEGGAVIELIELALEKPEKNMTELVFILLANLCSCADGREQFLQHAAGIAVVSKRILRVSPTTNDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARGVLRLHSKTWNNSPCIQVYLLTRFHR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01785 426 Pfam U-box domain 14 88 IPR003613 GO:0004842|GO:0016567
Gma12g01785 426 SUPERFAMILY ARM repeat 123 404 IPR016024 -
Gma12g01785 426 PANTHER WDSAM1 PROTEIN 11 424 IPR045185 GO:0061630
Gma12g01785 426 Gene3D - 109 417 IPR011989 -
Gma12g01785 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Gma12g01785 426 SUPERFAMILY RING/U-box 5 92 - -
Gma12g01785 426 SMART Ubox_2 17 83 IPR003613 GO:0004842|GO:0016567
Gma12g01785 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 11 424 - -
Gma12g01785 426 CDD RING-Ubox_PUB 18 61 IPR045210 -
Gma12g01785 426 ProSiteProfiles U-box domain profile. 13 90 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01785 Gma-Chr12 38478004 38479601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01785 11 416 U-box Gene Family AT2G35930 43.659 2.50e-110 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01785 - - gmx:100787419 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01785 12 38478004 38479601 Gma12g01785 12 38478004 38479601 ECH
Gma13g02773 13 42287648 42289201 Gma12g01785 12 38478004 38479601 GST
Gma12g01785 12 38478004 38479601 Gma12g00845 12 8051933 8053147 PCT
Gma12g01785 12 38478004 38479601 Gma11g01452 11 15115263 15116894 PCT
Gma12g00845 12 8051933 8053147 Gma12g01785 12 38478004 38479601 PCT
Gma11g01452 11 15115263 15116894 Gma12g01785 12 38478004 38479601 PCT