Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01778 ATGGAAGGCGTTCAGTTAGAAAAAGTAGTCTTCTTGTTATGTTTTGGTCTAATAATTACAATGAGTTATGGGGCTACAAACCCAAATGATGTCAAAGTTTTGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTTTGAAGTGGCCAGAGGAGGGAGATGATCCCTGTGGTCCTCCTTTATGGCCTTTTGTGTACTGTTCTGGAGATAGAGTAACTCAGATTCAGGCTAAGGATCTTGGTCTTAGAGGGACATTGCCTCACAACTTTAACCAACTCTCAGAACTCTTCAATTTGGGTCTCCAACGCAACAACCTTAGTGGGATGTTGCCTACTTTTAGTGGATTATCCAAATTGAAATATGCTTTCTTGGATTATAATGCATTTGATGCAATCCCGGCTGATTTCTTTGATGGACTTAGCAGTCTTATGGTCTTGACATTGGAAAAAAATCCACTGAATGTAAGTAGTGGCTGGTCGTTTCCCATGGATTTAGAAAAATCAGTTCAATTAACGAATCTTTCTTTGGCGTTTTGTAATTTGGTTGGACCGTTGCCGGATTTTCTGGGCAGGTTGCCATCCCTCACACAACTGAGCCTTTCAGGCAACAAACTGACTGGTGCCATTCCTGCTACTTTTGCTCAATCTTCAATCCAGGATTTGTGGTTAAATAATCAAGAAGGTGGAGGGTTGAGTGGTCCTATTGATGTTATTGCTTCAATGATTTTACTTAGACATGTTTTGCTACATGGAAACCAGTTCACTGGGCCAATTCCTCAGAATATTGGAAATCTTACTTCCTTGCAGGAACTCAATCTCAATAGTAATCAACTTGTTGGCTTGATTCCAGAGTCCCTAGCACATATGGAACTTGAGATCCTAGTGTTAAATAATAACATGCTAATGGGTCCAATACCAGAATTTAAGGCTGCCAATGTTTCTTATGATAACAACTTATTTTGTCAACCGGAGCCTGGGCTTGAATGTTCCCCTCAAGTTGCTGCACTACTGGATTTTCTGGACAAGCTGAATTACCCTTCATTTCTCATATCTGATTGGGTTGGTGATGAACCATGCACACGCAGCACAGGGTCATGGTTTGGATTGAGCTGCAATTCCAACTCAGAGGTATCTGTTATCAATCTACCTAGACACAAGCTAAATGGTACTCTAAGTCCTTCACTTGCTAAGTTAGATTCACTCCTTGAAATTAGGCTTGCAGGAAACAATATAACCGGTTCAGTTCCCGGTAATTTTACCGACTTAAAATCTTTAAGGTTGTTGGACTTAAGTGATAACAACCTTGAGCCTCCATTACCAAAATTTCATAATGACCCGAAGGTTGTCACTGTGGGTAACCCTCTTCTTCCTAACCAAACTGGAGGAAGTCCTAGTCCTATGCCTATTAACAACCCACCTTCACCACAGAATCCATCACATCCTCCATCCTCTCATGAGTCACCTGTTCCAGATCAGAGTTCAAGATCAAATCAATCCAAACCAAATGACTTGAAAATATTCAAAGCAGTAGGAATTGTGGCTGGAGTTGCTGTGTTTGCAGTTGTAGCTCTTTTGGTTGTTTATCCCTTCTTATGTTGCAGGAAGAACAAAAAAGCCTCCTTGGATGCTCCAAGTTCCATCATGGTTCACCCACGCGATCCATCTGATTCGGATAACATGGTTAAAATTACGGTTTCAAACGCCACTGGAAGTTTGTCAACAAAGACTGGGACAAGTTCTCAGAGTAACATTAGTGGTGAAACTCAAAACTCTCACATAATTGAGGATGGAAACCTTGTCATTTCTATACAAGTACTACGCAAGGTTACCAATGATTTTGCTTCAGAAAATGAACTAGGCCGTGGAGGGTTTGGGACTGTTTACAAGGGAGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGCATGGGGTTATTAGCAGTAAGGCATTGGAGGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGGCACCGGCATCTGGTATCCTTGTTGGGGTATTCCATTGATGGCAATGAAAGACTTTTGGTTTATGAATATATGTCTCTTGGAGCTCTAAGCCAGCATCTTTTTCATTGGAAAAGCTTGAAGTTGGAGCCTTTGTCTTGGTCACAGAGGCTTGCAATAGCACTAGATGTTGCTAGAGGGATGGAGTACCTTCACAGTCTTGCCCGTCAGACCTTTATTCATCGAGATCTTAAATCTTCTAATATCTTATTGGGTGATGATTTTCGGGCTAAAATTTCAGACTTTGGTTTGGTGAAGCATGCCCCAGATAGTGAGAAGTCTGTAGCAACCAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGTGTGGTGTTGATGGAACTTCTGACTGGACTTGTGGCACTTGACGAGAGTCGGCCAGAGGAAAGCCGGTACTTGGCCGAATGGTTTTGGCGAATTAAATCAAGCAAGGAGAAGCTTATGGCTGCTATTGATCCAGTTCTGGAAGCATCTGAAGAAACTTTTGAGAGCATAACCATTGTAGCTGAACTTGCTGGACACTGTACTGCAAGGGAAGCACATCATAGGCCAGATATGGGTCATGCAGTCAATGTCTTGGCAGCATTAGTGGAAAAATGGAAACCAGTTGATGATGAATTAGATTGCTACTCTGGCATTGACTACACAAGACCACTTCCTCAAATGTTGAAGATTTGGAAGGAAGCAGAAAGTGGAGAGTTTAGCTATGCTTCTTGTCTCGAGAACAGCAGAAGCAGTATTGCAGCCAGGCCTTCTGGTTTTGCAGACTCTTTTACCTCTGCTGATGCAAGATGA 2883 0.4218 MEGVQLEKVVFLLCFGLIITMSYGATNPNDVKVLNDFRKGLENPELLKWPEEGDDPCGPPLWPFVYCSGDRVTQIQAKDLGLRGTLPHNFNQLSELFNLGLQRNNLSGMLPTFSGLSKLKYAFLDYNAFDAIPADFFDGLSSLMVLTLEKNPLNVSSGWSFPMDLEKSVQLTNLSLAFCNLVGPLPDFLGRLPSLTQLSLSGNKLTGAIPATFAQSSIQDLWLNNQEGGGLSGPIDVIASMILLRHVLLHGNQFTGPIPQNIGNLTSLQELNLNSNQLVGLIPESLAHMELEILVLNNNMLMGPIPEFKAANVSYDNNLFCQPEPGLECSPQVAALLDFLDKLNYPSFLISDWVGDEPCTRSTGSWFGLSCNSNSEVSVINLPRHKLNGTLSPSLAKLDSLLEIRLAGNNITGSVPGNFTDLKSLRLLDLSDNNLEPPLPKFHNDPKVVTVGNPLLPNQTGGSPSPMPINNPPSPQNPSHPPSSHESPVPDQSSRSNQSKPNDLKIFKAVGIVAGVAVFAVVALLVVYPFLCCRKNKKASLDAPSSIMVHPRDPSDSDNMVKITVSNATGSLSTKTGTSSQSNISGETQNSHIIEDGNLVISIQVLRKVTNDFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGVISSKALEEFQAEIAVLSKVRHRHLVSLLGYSIDGNERLLVYEYMSLGALSQHLFHWKSLKLEPLSWSQRLAIALDVARGMEYLHSLARQTFIHRDLKSSNILLGDDFRAKISDFGLVKHAPDSEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEESRYLAEWFWRIKSSKEKLMAAIDPVLEASEETFESITIVAELAGHCTAREAHHRPDMGHAVNVLAALVEKWKPVDDELDCYSGIDYTRPLPQMLKIWKEAESGEFSYASCLENSRSSIAARPSGFADSFTSADAR 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01778 960 SMART serkin_6 613 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01778 960 PANTHER OSJNBA0070M12.3 PROTEIN 9 960 - -
Gma12g01778 960 Gene3D Ribonuclease Inhibitor 27 326 IPR032675 -
Gma12g01778 960 MobiDBLite consensus disorder prediction 438 500 - -
Gma12g01778 960 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Gma12g01778 960 Pfam Leucine rich repeat N-terminal domain 331 372 IPR013210 -
Gma12g01778 960 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Gma12g01778 960 SUPERFAMILY Protein kinase-like (PK-like) 591 889 IPR011009 -
Gma12g01778 960 SUPERFAMILY L domain-like 61 447 - -
Gma12g01778 960 CDD STKc_IRAK 619 889 - -
Gma12g01778 960 Pfam Protein tyrosine and serine/threonine kinase 616 884 IPR001245 GO:0004672|GO:0006468
Gma12g01778 960 SMART LRR_typ_2 422 444 IPR003591 -
Gma12g01778 960 SMART LRR_typ_2 192 215 IPR003591 -
Gma12g01778 960 SMART LRR_typ_2 116 139 IPR003591 -
Gma12g01778 960 SMART LRR_typ_2 398 421 IPR003591 -
Gma12g01778 960 SMART LRR_typ_2 265 288 IPR003591 -
Gma12g01778 960 SMART LRR_typ_2 140 163 IPR003591 -
Gma12g01778 960 SMART LRR_typ_2 93 115 IPR003591 -
Gma12g01778 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Gma12g01778 960 PANTHER OSJNBA0070M12.3 PROTEIN 9 960 - -
Gma12g01778 960 MobiDBLite consensus disorder prediction 466 485 - -
Gma12g01778 960 Gene3D Ribonuclease Inhibitor 331 457 IPR032675 -
Gma12g01778 960 ProSiteProfiles Protein kinase domain profile. 613 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01778 960 MobiDBLite consensus disorder prediction 486 500 - -
Gma12g01778 960 Pfam Leucine Rich Repeat 267 288 IPR001611 GO:0005515
Gma12g01778 960 Gene3D Transferase(Phosphotransferase) domain 1 691 906 - -
Gma12g01778 960 Gene3D Phosphorylase Kinase; domain 1 573 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01778 Gma-Chr12 38342674 38345935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01778 84 907 Receptor kinase-like Gene Family AT1G55610 31.093 1.50e-86 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gma12g01778 PK_Tyr_Ser-Thr 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01778 - - gmx:100785090 1822.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01778 12 38342674 38345935 Gma12g01778 12 38342674 38345935 ECH