Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01772 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGTGGCGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATTCAGCATCCCTACATTGTGCAATTTAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAATCGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAAATACTTTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACATCGTGATCTGAAGTGTTCCAACATCTTTCTAACCAAGGATCAAGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGTTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTGAAAACGCTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCTTAAAACACCCTTATTTGCTGCCTTATGTTGATCAATATCGTTCATCTTTCTGTACCCCAACAGCTGGTTCTCCTGAAAGGCCAATTTCTGCTGTCCATCATCCTCGAAAAAATAAGCCAGAAAGTCAAAACAGTAGTAGTAGTTTGAGTCCTGAGAAAGATAGTTTCATGTCGAGTGAGAAAAACACTGCAAATGAAGTAAAGAAGTGTGATAGAAAAATCACCGAAATAGACCTGACATCAATTGAGGATGACAGCTCTGAGCAACTCCTGCCCGAGGAAGAGGGAAATGGCTCCAGTAGAGTCAATGCCAAAACAGATGAGAAAGAGCTGACGAAGCAATCTAATAATGTACACCATTCTAATGCTGTATCTAAGCAACCAAAACCAATTAAGAATGTTGTGACAGCTTTAAAAGATGGAAAACTTAGAGAGACAAGTTCTCCAATAAGAGGCAATCGCATAAAGGTTGGTGGTGTATTGACCCATAAAATAAATTCAGAGACAGTGTCCAAATTGCCCAAACCCAATTTTGGTGCTTATGATTTGAAGCCTAATTTGGAGGTGCCAACTACTGCACCTTCTAAAACAACTCCTGATTCTGCAAAAAGAATGCAAGGATTGCATACTTCAAAGCATCAGTTACCAATGATAGAATCCACTCCAAAAACTAAACCTCGACATAATGCGATTCCACCATCTGGTCCAGTCAAACAAGTAGAAGGACGGGAAGTTCCTTCCAAGCCAAGGCAAAAGACTCGTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTGAGGCAGGCTGGGTTTGATGTTCCAAATGCAACAAATAATACTGGAAAGTCAAGTCCAAAGAAAATGGTTTGGGAGCCTAAGATGAGCCATCATCAGCTGACCAACACTCATCTACCACATGTTTCTAGAGAGACTACTAGAGAGCCTTTGAAGACTTTTGAAACCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCACTCTCTATTCAAGGATTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAACCAACACTTCCTGATCATGAGAGTTTAAACCACACTGAAAACGTGGAATCATGTCCATATAGCATTTCATGTGCTTCCTATTTGCATTTTGAGATGTCTGAACAATTATCTGGGGAAACCCCTGTGGTTACACCATGTTTTCAGAATATAACTAGTAATGAGAAAGTAAGTCCCAGTTTAACTCTTGATCACTCAGGCCAAGATGCTGAGGTAATGTTTGCTTCTGATGATAGTTTTTCCATAAATCAAAGGACTGCATCTGCTGGCTCCAGGTGTGATAATTTATCTGTAGATCCCTCTGCTGAAATCACACAAGAAATCAAAGACCCTCAAGATTCAAAGGAAATGTCTTCAGCCAAATCTCTCCAACAGTCGCTCCTCATTTCTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCTTCAAGTAAAGGAAGTAATAGGCTTGATAAAGTTAGCCGGCCAAAACTTATGTGCATCTCCACTGGTGATGACAAATTCATGGTGAGGGAAAGACTGTCATCAGTGGATGAAACTGCTCCTTCGATTATCTCTACTAAAATTTCAAGCCAGAAAGTTTTGCAAGAAGAGAAAGGAATGGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTGTTGGCCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTACCGCGTGGGGAGTGAGCAGCCAGGGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTCGGTAAGTTTATCAACATTGCAAGGGATGATTTAGAAATGAGAAATGTGAGCACCCCTTTGACCCTAAAATCTTCAAATTGCTCTGAAGCTATTGGCTTGAAGTCAAATATTTCTGATAATATGGAAATCAGAAACTTGAGTAGTCCTCCTAACTTAAAATCTTCAAGTTGCACCGACTTGATGAACATCAAATCAAGTTTTTCTGATCATCTTCTTGTTAGGAAACAAGATGTGAAAAACACTGATTCTCTTGTTTCAAAATCTGATTCCTCCGAGTATACCAAACATAACACTCCTACAGCTGCAGAGGAAACACCCCCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAAGCACTTGAAGGTCTGTTGGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCCTTTGGAAAAGATAAAGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATCGAGGAAAGTGGGGGACGCAGTTAA 3135 0.4144 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVQFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSIGVYFPEEKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLLPYVDQYRSSFCTPTAGSPERPISAVHHPRKNKPESQNSSSSLSPEKDSFMSSEKNTANEVKKCDRKITEIDLTSIEDDSSEQLLPEEEGNGSSRVNAKTDEKELTKQSNNVHHSNAVSKQPKPIKNVVTALKDGKLRETSSPIRGNRIKVGGVLTHKINSETVSKLPKPNFGAYDLKPNLEVPTTAPSKTTPDSAKRMQGLHTSKHQLPMIESTPKTKPRHNAIPPSGPVKQVEGREVPSKPRQKTRPSLLKPPSFPGHVRQAGFDVPNATNNTGKSSPKKMVWEPKMSHHQLTNTHLPHVSRETTREPLKTFETSSKGMQTDSSNSVSSSLSIQGFELSDFATTFIDLSEPTLPDHESLNHTENVESCPYSISCASYLHFEMSEQLSGETPVVTPCFQNITSNEKVSPSLTLDHSGQDAEVMFASDDSFSINQRTASAGSRCDNLSVDPSAEITQEIKDPQDSKEMSSAKSLQQSLLISGEKSVCEEFGPSSKGSNRLDKVSRPKLMCISTGDDKFMVRERLSSVDETAPSIISTKISSQKVLQEEKGMVLQNPAPERPAVGHLPPAFDDVIHVIRHSSYRVGSEQPGKESVEMGVQNVDVGKFINIARDDLEMRNVSTPLTLKSSNCSEAIGLKSNISDNMEIRNLSSPPNLKSSSCTDLMNIKSSFSDHLLVRKQDVKNTDSLVSKSDSSEYTKHNTPTAAEETPPKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGGRS 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01772 1044 MobiDBLite consensus disorder prediction 948 970 - -
Gma12g01772 1044 MobiDBLite consensus disorder prediction 297 319 - -
Gma12g01772 1044 MobiDBLite consensus disorder prediction 440 543 - -
Gma12g01772 1044 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Gma12g01772 1044 MobiDBLite consensus disorder prediction 335 385 - -
Gma12g01772 1044 MobiDBLite consensus disorder prediction 276 323 - -
Gma12g01772 1044 SUPERFAMILY Protein kinase-like (PK-like) 4 307 IPR011009 -
Gma12g01772 1044 CDD STKc_Nek 7 262 - -
Gma12g01772 1044 MobiDBLite consensus disorder prediction 948 966 - -
Gma12g01772 1044 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01772 1044 Gene3D Transferase(Phosphotransferase) domain 1 90 344 - -
Gma12g01772 1044 MobiDBLite consensus disorder prediction 356 371 - -
Gma12g01772 1044 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gma12g01772 1044 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01772 1044 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1028 - -
Gma12g01772 1044 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Gma12g01772 1044 MobiDBLite consensus disorder prediction 446 461 - -
Gma12g01772 1044 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1028 - -
Gma12g01772 1044 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01772 Gma-Chr12 38311437 38319113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01772 14 262 MAP Kinase Kinase Kinase AT1G53570 32.677 1.88e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma12g01772 Pkinase 7.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01772 K08857 - gmx:100818943 2043.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01772 12 38311437 38319113 Gma12g01772 12 38311437 38319113 ECH
Gma13g02781 13 42372973 42379932 Gma12g01772 12 38311437 38319113 GST
Gma12g01772 12 38311437 38319113 Gma12g00836 12 7812115 7818477 PCT
Gma12g01772 12 38311437 38319113 Gma11g01461 11 15356809 15362777 PCT
Gma12g00836 12 7812115 7818477 Gma12g01772 12 38311437 38319113 PCT
Gma11g01461 11 15356809 15362777 Gma12g01772 12 38311437 38319113 PCT