Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01754 ATGGATGATCTCCCACCAGGTTTTCGATTCTACCCAACAGAAGAAGAATTAGTTTTCTTCTATCTACACAACCAGCTAGAAGGCCAAATACACGACACAAGCAGAGTCATTCCAGTCATTGACATCAATGGCGTAGAGCCATGGAACCTTCCATCACTTGCAGGGGAGCTTTGTCGTGGAGACACGGAGCAATGGTTTTTCTTTTCACCGAGACAAGAGAGAGAGGCCAGAGGAGGCAGACCCAACAGAACCACAGCAAGTGGTTATTGGAAGGCCACTGGTTCCCCTGGCCATGTTTACTCTTCTGACAACAAAGTCATTGGGATGAAGAAAACCATGGTCTTTTACAAAGGGAAAGCTCCCACCGGAAGGAAAACCAAATGGAAGATGCATGAGTATAAAGCCATTGAACACTCTGATCAATCCAACACTGCCCCTCCAAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTGATATCGGGAAGCTTTCGATCGTTTGATCGACGCCCACTGGATATGCCAAGAGTTGAGCTACGAGTTGTTGATGGGGACAGAGGTGCTGCTTCAACAAGTGCTCAAGCTCAACAGAGAAGTTCTTCTCATACTTCCCACTCTGGTGGTGATGCTCATGTCACAGATGCTGGAGCAGGGTCAAGTGGAACAAATTGGAATGCAAGTAATAGGGTTGAGGAACCACTTTGGGAATGGGAACAACTTGATTGGCCATGA 735 0.4694 MDDLPPGFRFYPTEEELVFFYLHNQLEGQIHDTSRVIPVIDINGVEPWNLPSLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKAIEHSDQSNTAPPKLRHEFSLCRVYVISGSFRSFDRRPLDMPRVELRVVDGDRGAASTSAQAQQRSSSHTSHSGGDAHVTDAGAGSSGTNWNASNRVEEPLWEWEQLDWP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01754 244 MobiDBLite consensus disorder prediction 188 233 - -
Gma12g01754 244 MobiDBLite consensus disorder prediction 190 209 - -
Gma12g01754 244 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Gma12g01754 244 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Gma12g01754 244 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Gma12g01754 244 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Gma12g01754 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 244 - -
Gma12g01754 244 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01754 Gma-Chr12 38154434 38155737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01754 2 244 NAC Transcription Factor Family AT5G22380 59.836 1.42e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma12g01754 NAM 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01754 - - gmx:100780264 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01754 12 38154434 38155737 Gma12g01754 12 38154434 38155737 ECH
Gma13g02796 13 42538116 42540521 Gma12g01754 12 38154434 38155737 GST
Gma12g01754 12 38154434 38155737 Gma12g00814 12 7596230 7597876 PCT
Gma12g01754 12 38154434 38155737 Gma11g01493 11 15735617 15737318 PCT
Gma12g00814 12 7596230 7597876 Gma12g01754 12 38154434 38155737 PCT
Gma11g01493 11 15735617 15737318 Gma12g01754 12 38154434 38155737 PCT