Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01744 ATGTACCATCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGATCTGGTGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCTAGATTAAAATGGACACCAGATCTTCATGCCAGGTTTATAGAAGCAGTCAACCAGTTAGGGGGAGCTGACAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGAATTCCAGGGCTTACCTTATATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTAACATACAAAATCACAACAAGTGCATCAACTGGGGAGAGACTTTCTGAAACAAATGGAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCCAACAAAGATTTGCATATAAGCGAGGCACTGCAGATGCAGATTGAGGTTCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAAGAGACTCTTGGCAGACAAAATTTGGGAGTAGTAGGAATTGAAGCTGCCAAAGTTCAACTTTCAGAGCTGGTATCCAAAGTCTCATCACAGTGCCTCAACTCAGCATTCACAGAGCCGAAGGATTTGCAAGGATTTTTCCCTCAGCAAACACAAACCAACCCGCCAAACGATTGCTCAATGGACAGTTGCCTCACATCCAGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATGGCTTAAGACACTTCAACAGCCATGTGTTCATGGAACATAAGGAAGCCACAGAAGCTCCCAACAACCTTAGGAACCCTGAACTCAAGTGGTGTGAAGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAAGAATGAAGAAAGAAGAAACTATGCTGCTGAAAGCAGTCCCAACAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATGGAATCAACTTGTATCCTGAGAGACTAATCACAGAAAGCCAATCAGATGGTGAGTTCCAGCATAGGAACAGAATCAAGCCAGAAACATTGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGTTGCCTGCTTCTTACTTTGCAGCAGCAAGATTGGACCTAAACACTCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1263 0.4291 MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTYKITTSASTGERLSETNGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGVVGIEAAKVQLSELVSKVSSQCLNSAFTEPKDLQGFFPQQTQTNPPNDCSMDSCLTSSDRSQKEQEIQNGLRHFNSHVFMEHKEATEAPNNLRNPELKWCEDGKKNTFLAPLSKNEERRNYAAESSPNNLSMSIGLERETENGINLYPERLITESQSDGEFQHRNRIKPETLKPVDEKVSQDYRLPASYFAAARLDLNTHGDNEAATTCKQLDLNRFSWS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01744 420 MobiDBLite consensus disorder prediction 235 256 - -
Gma12g01744 420 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 420 IPR044848 GO:0003700
Gma12g01744 420 PANTHER MYB-RELATED PROTEIN 2 4 420 - -
Gma12g01744 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Gma12g01744 420 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Gma12g01744 420 Gene3D - 45 103 - -
Gma12g01744 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Gma12g01744 420 Coils Coil 149 169 - -
Gma12g01744 420 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Gma12g01744 420 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01744 Gma-Chr12 38048878 38051950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01744 78 419 G2-like Transcription Factor Family AT3G04030 51.576 1.16e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma12g01744 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01744 - - gmx:100810396 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02807 13 42617105 42620249 Gma12g01744 12 38048878 38051950 GST
Gma12g01744 12 38048878 38051950 Gma12g00796 12 7429409 7432310 PCT
Gma12g01744 12 38048878 38051950 Gma11g01507 11 15911822 15915402 PCT
Gma12g00796 12 7429409 7432310 Gma12g01744 12 38048878 38051950 PCT
Gma11g01507 11 15911822 15915402 Gma12g01744 12 38048878 38051950 PCT