Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01742 ATGGCGAGCCACAGAATAGGAGAACTTGGTTTGTCTGAGTCAGGACCTTCAAGTCACCACATCCCTTATGGAGTGCTTCACGGAATTAACACTCCTGCATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGAGGGCAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGTTGGTTCAAAGTCAGGAGGAGAAAGCACTGATTCAGGTCTCTCTAGCAAAACTGAGCCCCCCTTTGAGGCAGAATCTCCCATAAGTAAAAAGGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCAGCATCTGCAGCATAGACAGCAACTTCAACAGGAGATGGCAAGTGATgccccaagagcagcctcttcacagaatcaatcagcagccaaatcacctcaagaaaagAGAAAGGGAGCTGGTTCTACATCAGACAAACCACTTGATGCAAAGACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTTAACCAGATAGAACAAGAACTTCAAAGAGCACGCCCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGTACTGTAAGCTCGGCAGGAGCCGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGAAGATCACAGACTAATGGGGGAGCTGAGGAACGGGTTGCAAGCACCGTTATCAGACAGTGATATGAGAGTGATGGTGGATGGATATCTTTCTCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCTAAATCTGATGTCTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGTTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCATGATGCTGATTCAGCAGTTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCCTGAAGCATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGACTTGAGCAGTTGCAGCAGTCACTTGTGGACACCATAGCTGGAGGCCCAGTGGTTGATGGTGTTCAACAAATGGTCGTTGCCATGAGCAAGCTTGCCAATCTTGAAGGTTTTGTTCGCCAGGCTGATAATTTGAGGCAGCAAACTCTTCATCAGCTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGCTTTATTGTTATTGGAGAGTACTATGGACGTCTTCGTGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAACGACGATAACTCATGCCAAACAACTACGGAAATGCAAATAGTCCAACATTCTCAGAATTATTTCTCAAGTTTCTGA 1467 0.4417 MASHRIGELGLSESGPSSHHIPYGVLHGINTPASSLINQGSAFDFGELEEAIVLHGVKGRNDEGKASLFTARPAATLEMFPSWPMRFQQTPRVGSKSGGESTDSGLSSKTEPPFEAESPISKKASSSDHHQAFDQQHLQHRQQLQQEMASDAPRAASSQNQSAAKSPQEKRKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLNQIEQELQRARPQGLFVDCGGVGSTVSSAGAAMFDMEYARWLEEDHRLMGELRNGLQAPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLIMMLIQQLEPLAEQQIMGMYGLKHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLINDDNSCQTTTEMQIVQHSQNYFSSF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01742 488 ProSiteProfiles DOG1 domain profile. 249 457 IPR025422 GO:0006351|GO:0043565
Gma12g01742 488 Coils Coil 204 228 - -
Gma12g01742 488 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Gma12g01742 488 SMART brlzneu 181 246 IPR004827 GO:0003700|GO:0006355
Gma12g01742 488 MobiDBLite consensus disorder prediction 172 186 - -
Gma12g01742 488 PANTHER TRANSCRIPTION FACTOR TGA9 64 467 - -
Gma12g01742 488 Pfam Seed dormancy control 267 340 IPR025422 GO:0006351|GO:0043565
Gma12g01742 488 SUPERFAMILY Leucine zipper domain 185 227 IPR046347 GO:0003700|GO:0006355
Gma12g01742 488 MobiDBLite consensus disorder prediction 80 186 - -
Gma12g01742 488 MobiDBLite consensus disorder prediction 137 167 - -
Gma12g01742 488 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Gma12g01742 488 Gene3D - 184 231 - -
Gma12g01742 488 MobiDBLite consensus disorder prediction 122 136 - -
Gma12g01742 488 CDD bZIP_HBP1b-like 185 235 - -
Gma12g01742 488 MobiDBLite consensus disorder prediction 88 111 - -
Gma12g01742 488 PANTHER TRANSCRIPTION FACTOR TGA9 64 467 - -
Gma12g01742 488 Pfam bZIP transcription factor 184 216 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01742 Gma-Chr12 38020356 38028641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01742 126 488 bZIP Transcription Factor Family AT1G08320 67.857 5.04e-177 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gma12g01742 DOG1 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01742 K14431 - gmx:100775461 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01742 12 38020356 38028641 Gma12g01742 12 38020356 38028641 ECH
Gma13g02809 13 42637257 42644974 Gma12g01742 12 38020356 38028641 GST
Gma12g01742 12 38020356 38028641 Gma12g00791 12 7372985 7381014 PCT
Gma12g00791 12 7372985 7381014 Gma12g01742 12 38020356 38028641 PCT