Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01739 ATGAGTTTTAGGGAGTGCAATAATGTAGAAAACAAGAATCTGTGTCTTCAAACCCCAACTTTTATTGAGTGGCTCAAACCATCATCATCTTCCTCTCTAACTAGTTTAATTTCTTCATCACCTCCTTCTTATTCCTTGACTCAGCATGAACAACTTGCCCAAGAAACCATCCAGTTTTTGCCCTTCAAGGAAGATCAGCATATAAGAGTGCAAAAGGAAGGTTTTGAAGTAAAGGAAGAGAAGAAGGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTAACACAGGAGGCCatgaccctgatgatgataatgatcatgatgctgatgatgaGAAGAAGGTTTTCCATGTTAAGGAAGAAGAAGAACCCTTGAAGAAAGGCTTCCAGGGTAATTGTTCTTTCAATCAGGAGAGAAGATTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGGTCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCACGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTTAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCTCCACATCCTTCTCTTGAAGGCTTCGTCGAGGATGAGAAGGAATGTGTTACCGGTTCTGATGATGAAGATGATGTTgctcatacatga 966 0.4027 MSFRECNNVENKNLCLQTPTFIEWLKPSSSSSLTSLISSSPPSYSLTQHEQLAQETIQFLPFKEDQHIRVQKEGFEVKEEKKVEQVTVALHIGLPNTGGHDPDDDNDHDADDEKKVFHVKEEEEPLKKGFQGNCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECVTGSDDEDDVAHT 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01739 321 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Gma12g01739 321 Pfam Zinc finger, C2H2 type 157 176 IPR013087 -
Gma12g01739 321 Gene3D Classic Zinc Finger 156 179 - -
Gma12g01739 321 PANTHER ZINC FINGER PROTEIN WIP2 1 318 IPR043584 GO:0003700|GO:0010468
Gma12g01739 321 SUPERFAMILY beta-beta-alpha zinc fingers 143 180 IPR036236 -
Gma12g01739 321 SUPERFAMILY beta-beta-alpha zinc fingers 227 261 IPR036236 -
Gma12g01739 321 SMART c2h2final6 241 261 IPR013087 -
Gma12g01739 321 SMART c2h2final6 157 179 IPR013087 -
Gma12g01739 321 SMART c2h2final6 204 236 IPR013087 -
Gma12g01739 321 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 318 - -
Gma12g01739 321 Gene3D Classic Zinc Finger 197 289 - -
Gma12g01739 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01739 Gma-Chr12 37949504 37952867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01739 7 310 C2H2 Transcription Factor Family AT1G08290 57.227 1.10e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g01739 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01739 - - gmx:100819306 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01739 12 37949504 37952867 Gma12g01739 12 37949504 37952867 ECH
Gma13g02812 13 42671486 42674795 Gma12g01739 12 37949504 37952867 GST
Gma12g01739 12 37949504 37952867 Gma12g00788 12 7309491 7313249 PCT
Gma12g01739 12 37949504 37952867 Gma11g01514 11 16037114 16040850 PCT
Gma12g00788 12 7309491 7313249 Gma12g01739 12 37949504 37952867 PCT
Gma11g01514 11 16037114 16040850 Gma12g01739 12 37949504 37952867 PCT