Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01736 ATGTATAGCAATTTCAAGGAGCAAGCCATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCGGGAAACTACGCGAAAGCGTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGGGCCGAGGAGATTCGGGCCGTGCTCGACGATGGCGGCCCCGGCCCAGCCTCCAACGGGGACGCGGCGGTGGCTGCAAGGCCCAAGACCAAGCCGAAGGACGGGGAAAGCGGTGGCGGTGGTGACGGCGAGGACCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCGGCCATCATAAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCCAAACAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAGTTCCCTCAGTTCTTTACTGGGAAAAGACGACCCTGGAGAGCTTTCTTGTTGTATGGACCTCCTGGAACGGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAAGCTGAGTCCACGTTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCGAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTTATTGACGAAATTGATTCCCTGTGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACGCCCTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGCATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAACTTGACTGAAAGCGATTTTGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTCTTCTTGAAGAATCCCGAGGGTATGTGGATCCCGTGTGGACCAAAGCAACAGGGTGCAGTACAAACCTCAATGCAAGAGCTTGCTGCAAAAGGACTTGCTTCTAAGATCCTTCCGCCCCCTATTACGAGGACAGATTTTGAGAAGGTACTCGCTAGACAAAGGCCTACAGTAAGCAAAGCCGACCTTGATGTTCACGAGAGATTCACAAAGGAATTTGGAGAGGAAGGTTAA 1311 0.4996 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGESGGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFLKNPEGMWIPCGPKQQGAVQTSMQELAAKGLASKILPPPITRTDFEKVLARQRPTVSKADLDVHERFTKEFGEEG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01736 436 SMART AAA_5 165 301 IPR003593 -
Gma12g01736 436 MobiDBLite consensus disorder prediction 73 112 - -
Gma12g01736 436 Gene3D - 301 416 - -
Gma12g01736 436 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 436 - -
Gma12g01736 436 SMART smart 2 79 IPR007330 -
Gma12g01736 436 ProSitePatterns AAA-protein family signature. 271 290 IPR003960 GO:0005524|GO:0016887
Gma12g01736 436 Gene3D - 128 424 IPR027417 -
Gma12g01736 436 SUPERFAMILY MIT domain 2 81 IPR036181 -
Gma12g01736 436 MobiDBLite consensus disorder prediction 91 112 - -
Gma12g01736 436 PANTHER AAA DOMAIN-CONTAINING 1 436 - -
Gma12g01736 436 Pfam ATPase family associated with various cellular activities (AAA) 170 299 IPR003959 GO:0005524|GO:0016887
Gma12g01736 436 CDD AAA 136 299 - -
Gma12g01736 436 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Gma12g01736 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 432 IPR027417 -
Gma12g01736 436 Gene3D - 6 75 - -
Gma12g01736 436 Pfam Vps4 C terminal oligomerisation domain 369 433 IPR015415 -
Gma12g01736 436 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01736 Gma-Chr12 37910679 37918143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01736 164 357 Calmodulin-binding Proteins AT3G56690 37.245 4.90e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01736 K12196 - gmx:100806836 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01736 12 37910679 37918143 Gma12g01736 12 37910679 37918143 ECH
Gma13g02814 13 42699430 42703354 Gma12g01736 12 37910679 37918143 ECH
Gma13g02814 13 42699430 42703354 Gma12g01736 12 37910679 37918143 GST
Gma12g01736 12 37910679 37918143 Gma12g00780 12 7265271 7269176 PCT
Gma12g01736 12 37910679 37918143 Gma11g01520 11 16093474 16097622 PCT
Gma12g00780 12 7265271 7269176 Gma12g01736 12 37910679 37918143 PCT
Gma11g01520 11 16093474 16097622 Gma12g01736 12 37910679 37918143 PCT