Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01720 ATGAATTTTGAGATCGAATCCCCGTTTTCATTTCCAATTCAATCTTCCTCTCCCATTTCCCAATCATCACCATGCACAGCTCCTAATAATAACCCTAACCTAATTTCACAACTACCGTCGCTTTCACAACTAGTATCACACAAAAGGAAAGGTGGAAGAAAAAAGTTCAAGGAAACTCGGCACCCAATTTATAGGGGTGTCCGACAAAGGAAGGGAAAGTGGGTTTGTGAACTTAGGGAACCAAAGAAAACTACAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGAGCACATGATGTGGGTGCCCTAGCCATTAGGGGCACCTCAGCAATTCTAAACTTTCCAAACTCAGTTTCCCTTCTTCCAATCGCTAACTCATTATCTTCACGTAAAGATATTCGAGCAGCTGCAGTAGAAGCCGCTGAGAGTCTCAGACCAATCTCCAATTCTCATCACAAGAAAATTAGCCGCAAAAGTAAGTCTACGAGAGCTAAGAAGGTTCCATCATTAGAGGAAACAACAAAGGAAACGGTGTTGGACTCGTCCTTGCACTTGAAGAGCATGCATAGTTTGCTGGATCGTGAAAAATGTGATGTGATCAACAGTACTAGTGGCACAGAGAAAAACAATTTGGATTTGTCTTCAACCATGTTCTTCGATGAGGAGGCGTTGTTTAACACGCCGGGTCTCTTGGATAGAATGGCTGAGAGTTTGGATATTTTCCCACTACTACCATCAATGGATTATTATTGGGATGATCATGCTTACTGCACAGACTTCAATTTATGGACGGATTAA 810 0.4235 MNFEIESPFSFPIQSSSPISQSSPCTAPNNNPNLISQLPSLSQLVSHKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGTSAILNFPNSVSLLPIANSLSSRKDIRAAAVEAAESLRPISNSHHKKISRKSKSTRAKKVPSLEETTKETVLDSSLHLKSMHSLLDREKCDVINSTSGTEKNNLDLSSTMFFDEEALFNTPGLLDRMAESLDIFPLLPSMDYYWDDHAYCTDFNLWTD 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01720 269 MobiDBLite consensus disorder prediction 7 31 - -
Gma12g01720 269 MobiDBLite consensus disorder prediction 154 175 - -
Gma12g01720 269 MobiDBLite consensus disorder prediction 1 31 - -
Gma12g01720 269 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Gma12g01720 269 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Gma12g01720 269 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Gma12g01720 269 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Gma12g01720 269 ProSiteProfiles AP2/ERF domain profile. 63 119 IPR001471 GO:0003700|GO:0006355
Gma12g01720 269 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 2 268 - -
Gma12g01720 269 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Gma12g01720 269 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Gma12g01720 269 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 268 IPR045277 GO:0003700
Gma12g01720 269 SMART rav1_2 63 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01720 Gma-Chr12 37764636 37765445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01720 17 268 AP2-EREBP Transcription Factor Family AT5G51990 37.647 1.22e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma12g01720 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01720 - - var:108332912 334.339