Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01718 ATGAGATTGGAGAAATGCTGGTTTTGCTCTTCAACCATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAGAACTTTAAAATGAAGAGAAATCCTCGTAAGGTAAAATGGACCAAGGCATATCGTCGAGTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGAAAGAGAAACAGGCCTGAAAGATATGACAGGAATCTTGCGGAGAATGTCCTCAAGGCCATTCCTAAGATTGATAAGATCAGAGTCTCGAGGGAGGAGAGACACCATAAGAACAGGATGAAAGGCAAAAAGGAAAAATTGCTGAAGGAGGCAGTGAAGGAGTTGGAGCAGGGCATCAGTTTGGTCAAAGCTCCTTCTGTGCTTCAACAGGATCCATCTCTCACTTTACCAAAGATCAAAGTCAAGGTTTCCCAACAGCAATCAGAGGAGAATCATGCCATGGAAGAGTAA 507 0.4221 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVSREERHHKNRMKGKKEKLLKEAVKELEQGISLVKAPSVLQQDPSLTLPKIKVKVSQQQSEENHAMEE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01718 168 PANTHER 60S RIBOSOMAL PROTEIN L24 1 168 IPR000988 -
Gma12g01718 168 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Gma12g01718 168 PANTHER BNAA04G10330D PROTEIN 1 168 - -
Gma12g01718 168 SMART 4TRASH 6 44 IPR011017 -
Gma12g01718 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Gma12g01718 168 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Gma12g01718 168 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Gma12g01718 168 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01718 Gma-Chr12 37738867 37739796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01718 1 168 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 69.643 7.53e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01718 K02896 - gmx:100306000 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01718 12 37738867 37739796 Gma12g01718 12 37738867 37739796 ECH
Gma13g02832 13 42821271 42822205 Gma12g01718 12 37738867 37739796 GST