Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01711 ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGTGAGTCTGTTAAGGTAGATCCAGCCGAATTCGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAATCAAATGAACCAGTTGTTCTCTACTTGAAAGTTGGTCAACAGAAATTTGTCTTGGGAACCCTTTCCAGGGAGAAAATTCCTCAAATACCTCTGGAATTGGTTTTGGAAAAGGAGTTTGAGCTTTCCCACAACTCAAAGAATGCCAGTGTTCATTTCTGTGGATACAAGGCATTTTATGATGCTGGCGATGATAGCGAGGAGGATGAATTTACTGATAGCGAAGAGGATGTTCCATTGCTTAAAGCAGAGAATGGAAAACCTGAAACAAAAGCTGAAGAGTTGAAGGTACCTGAATCTAAAAAAGCTGTTGCCAAGGCTAGTGCATCAGCAAAACAAGTCAAGATTGTTGAACCGAAAAAAGACAATGAAGAGGACTCTGATGATGATTCTGACGAAGATGATGATTTTGGAAGTTCTGATGAAGAGATGGAGGATGCTGATAGTGACAGTGATGATGAGAGTGATGACAAAGAAGATGATGATGAAGAAACCCATCCTAAGAATAAGAAGGCAGATCTAGGAAAGAAGAGACCCAATGAATCTGCATCAAAAACTCCAGTTTCCTCCAAGAAAGCTAAGAATGCCACTCCTGAAAAGACTGATGGTAAGAAAGGTGGACATACAGCAACTCCTCACCCTGCGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCCAAAGCCAAGACTCCCAACAATGAAGCCAAGACTCCCATGTCTGGTGGACTCTCTTGCAAAAGCTGCAGCAAGTCTTTCAACTCTGAAAGTGGTCTGCAACAACATAACAAGGCAAAGCATGGTGGTCAGTGA 924 0.4318 MEFWGAEVKVGESVKVDPAEFEACIHLSQAALGEAKKDKSNEPVVLYLKVGQQKFVLGTLSREKIPQIPLELVLEKEFELSHNSKNASVHFCGYKAFYDAGDDSEEDEFTDSEEDVPLLKAENGKPETKAEELKVPESKKAVAKASASAKQVKIVEPKKDNEEDSDDDSDEDDDFGSSDEEMEDADSDSDDESDDKEDDDEETHPKNKKADLGKKRPNESASKTPVSSKKAKNATPEKTDGKKGGHTATPHPAKKGGKTPSSEAKAKTPNNEAKTPMSGGLSCKSCSKSFNSESGLQQHNKAKHGGQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01711 307 MobiDBLite consensus disorder prediction 200 218 - -
Gma12g01711 307 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Gma12g01711 307 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 303 - -
Gma12g01711 307 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 303 - -
Gma12g01711 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 307 IPR013087 -
Gma12g01711 307 MobiDBLite consensus disorder prediction 263 301 - -
Gma12g01711 307 ProSitePatterns Zinc finger C2H2 type domain signature. 283 304 IPR013087 -
Gma12g01711 307 MobiDBLite consensus disorder prediction 161 199 - -
Gma12g01711 307 MobiDBLite consensus disorder prediction 114 139 - -
Gma12g01711 307 MobiDBLite consensus disorder prediction 103 307 - -
Gma12g01711 307 Gene3D Nucleoplasmin core domain 1 101 - -
Gma12g01711 307 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01711 Gma-Chr12 37640956 37644722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01711 1 304 C2H2 Transcription Factor Family AT5G03740 39.748 9.48e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g01711 NPL 9.3e-15 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01711 - - gmx:100795506 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01711 12 37640956 37644722 Gma12g01711 12 37640956 37644722 ECH
Gma13g02839 13 42902255 42905597 Gma12g01711 12 37640956 37644722 GST
Gma12g01711 12 37640956 37644722 Gma12g00755 12 6937979 6941872 PCT
Gma12g01711 12 37640956 37644722 Gma11g01551 11 16555544 16558180 PCT
Gma12g00755 12 6937979 6941872 Gma12g01711 12 37640956 37644722 PCT
Gma11g01551 11 16555544 16558180 Gma12g01711 12 37640956 37644722 PCT