Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01706 ATGGAAGAACCTCCCGTCGTGAGATCCAGGGGCCGCCCGCGCAAACGGAGGAGAGAAGACGACGCAACCGTCACCGGCGACGCGAAAACTCTTCCCGAGGCGAAGAAGATGATGCCAATTGCATTGGTTGGACGATACGTGCTGAAAGAGTTCCGCAGAAACACGGTTCTTCTCGGCAAAGTCGCGCGTTACGCGAGTGGATTGTACAGAGTCGTGTACGAGAGTGGCGGTTTCGAGGATTTAGATAGCAGCGAGATTCGTAGGATACTTCTCCTTGATAGTTATTTCGACGACGATTTGATTCGGAGGAAGGTTGAATTGGAGGAATCGGTGTTGCCGAAGATCGCTGCAGAGGAACCGGAGAAAGGTTCGAGCGAATTGCAAGGTGAATTATCGGTTGAGAACGAGGAGGAACGAGCTAAGACGGATGATGATGAGTCGTTCGGTGAGGCTAGGGATTCAAGTTCCGGTTCCGAAATGCCAGAAACGCAGATACCGCCGCCGCTTACGCTGCCGCCGTCTTCCGGAACAATTGGAGTGCCGGAACCGTGCGTTTTGAATCTCTTTTCGGTTTACGGATTTTTAAGATCGTTTAGCATTCGCCTGTTTCTGAGTCCATTTACTTTGGATGAGTTTGTCGGTGCTCTGAACTGTAAAGTTTCTAACACGTTGCTCGATGCAATTCATGTTTCGCTGATGCATATTTTGAAACGTCACCTTGAAAATATTTCACCAGATGGCTCGCGGCCTGCAACAAAATGCCTTAGGTGCAGTGATTGGAGTTTGCTTGATGCTTTGACTTGGCCTGTTTTTGTGTTTCAGTATTTAGCAATTTTTGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAAATCTTTTATGGCGAGTATTATTTATTGCCTGCAAGTAGGAAATTGACAATATTGCAAATTCTCTGTGATGAAGTTTTGGCGTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATCAATTATGATAATGAAGATAGCCTTCCTGCTGAAAATGGGCCTAGAAGAGTCCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATGCTGAAACTAAGAAGTATGTTTCAGAATTGAATGCGGAGGATGATGGTGATGTTGATGGAAATGGAGATGAATGTCGCTTATGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATAAATTTGATTGGGCCTACAATTGCACGGGGGACATCACTTAAAGGGGCTGAAGTATTTGGAAAAGATTTGTATGGGCAAGTTTTCATGGGTACTTGTGACCACTTACTGGTACTCAATGTCAAAAGTGATGACTTTTGTCTTAAATACTACAATCAGAATGATATTCCTAGAGTTCTCCAAGTCCTTTATGCATCCGAACAACATAGACCTGTATACAATGGTATTTGCATGGCAATGTTAGAATATTGGAATATTTCAGAAAACTTCTTACCCCTCTGTGTCAGTAAACTTCCTCCTATGATTGAAGAAGAGCATAAAGCTGTTAGTTCGGTGAAGGCAGACTACAGTTTAACGTTTGGGAATGGGATTTGTAGTGATAATTTGGTGCCATCTCTTGATGCTTCATTGGTTACAACTCGAAGTCCTGCTCCTGGAAGCAGTGGCAATGCAAGAACTACTGTGAATCTGAAGCTTCACGAGGAAACTGCAATGGATTCGTCTGTTTCAACTAACCATCAGTCTGACCCAAAGTGCCGAAATTATGTTAATAGGTCAGCTGCAGTAAGCCCTGCCAAGTGCTCCTTGGTAAGCAGCCAATTTAGTAATTATGGGGACGCTAATGATATAGGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGACCAATCTGGTTTTGGAAAGTGCAAAAGCAGTTTAATTAATGATTTTGTGTACATGGGTTGCTCCTATAAACCACAGTCATATATTAATTACTATATGCACGGTGATTTTGCTGCATCTGCTGCTGCTAACCTGGCCGTTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCTGGCAACTTGGGGAAAGCTACATCTGGAAACACTTATTTGCTAGCAAAAGCATTCTCCCAAACAGCTTCACGCTTTTTTTGGCCGAGTTCCGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGATGGTGCATTTCTTGTAAAGCCCCTGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATAAGTGCCACCAAAAGTGCAATGAAAATCCTTTCTGGTTTTGCTCCTGTAAGGAGTGGAGAAGGAATCATCCCTAGCATTGCTACATATGTTATATATATGGAGGAAAGTTTGCATGGTTTAATAGTTGGGCCCTTTCTAAGTGAATGGTATAGAAAGCATTGGCGTAAACAGGTGGAACGAGCTAAATCATTTAGTGATATAAAGCCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTTAAGTTGATGGATGATTGGTTGGCTGAATTTTCTACAATGCAAAGTGCTGCATGTACTCTTGGAACAACACAGAAACGTGCAACTTGTGGGAGGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGCTGGTGGTTGTCAGGAAAATTTTGCATGGTGGCATGGCGGGAAATTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGTCAGAAAAGGAGCCCGCCAAGGTGGTTTGAGGAAAATTTCGGGTATATTCTATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCTCAGCTGGCACTTCAGGTCCGATATCTAGATTTTCATATCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCAGGATGTGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGGAATGCAAATATTCGTGATAAAAAAATTGCAGAGGGCAAAATTTTATACAGAGTAGCCTTTGGAAGCCAGAAACATCTTCCTTCTCGGGTAATGAAAAATGTTGAAATAGAGCAAGGTCCTGAAGGGATGGAAAAATATTGGTTTTCTGAAACACGTATTCCTTTATATTTGGTAAAAGAGTACGAATTACGCAATGGAAAAGTACTATCTGAAAAAGAGTACCTGCATATTACATCTCATGTGCACAAAAGGCGGTTGAAAGCTACCTACAAGGACATATTTTTTTACCTTACCTGCAAGAGAGACAAATTGGACATGTTATCATGCTCTGTATGTCAGCTGGTTGTTTTAGTTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCCGTGAGTTCAACAGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCCTGTAATGAATCTCCAACTAGTCCCTTACTCTTACAAGGACAAGAACGTAGCACTTTGGCAGTTCTGAAGGGGCCAAGGCCTAAATGTGATGGTCAAGGATTGATTTCTACTAGGACAAAGAATAGTCGACTTGACATGAAACTAGTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGTAGCAGAAGTTGTTCTTGGGGTGTTATATGGAAAAAGAAGAATAATGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTTTAAAGGGAGGTTCAGGCCTGCCTCAATTGGATCCTGTTTGTCGCTTGTGCCATAAACCATATAGATCTGATCTAATGTATATTTGCTGTGAAACATGCAAACATTGGTATCATGCTGAAGCCGTTGAACTTGAAGAATCCAAACTTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCACCTGTGTGTCCTTACTCTGATTTGTATAAGATGCAAGAGGGCAAGAAGTTACTCACAAGGGCTTCAAGGAAAGAGCACTTTGGGGCAGATTCTGATTCTGGTACACCTATTGACACGAGAACATGTGAGCCTGCAACTCCTATCTATCCTGCAGGGGATGTCTCTAGACAAGACAATGATCCTCTGTTGTTCTCCCTTTCAAGTGTTGAGCTCATTACAGAACCCCAGTTAAATGCAGATGTTGCAGGTAATACTGTCTCTGGGCCAGGGCTTCTGAAATTACCTAAACGTGGGAGGGAGAACAATGGTTCTTTTAGAGGTAATCTTCATGCTGAGTTTTCAACAAGCAATGAAAATGAAATGGTGTCCAAATCTGTAAAAGATTTATCACCTGTAGAATATGGCTCTGCTGACTGCAATCTTCTGAATAACTCCGAAATTGTTAAATTTGATGCATTGGTGGATTTTGAACCTAATACCTACTTCTCTCTGACTGAACTGCTCCACACAGACGATAATAGTCAATTTGAGGAAGCTAATGCATCTGGGGACTTAGGGTATTTGAAAAATTCTTGTAGATTAGGTGTACCTGGAGATTGTGGGACTGTTAATTTAGCATCCAACTGTGGATCTACAAATTCGTTACAAGGAAATGTTAATAATTGTCGGCTATGTTCACAAAAGGAACTGGCCCCTGATCTCTCTTGTCAGATTTGTGGGATTAGGATTCACAGCCATTGTTCACCTTGGGTTGAATCACCATCTCGGCTTGGTAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4842 0.4232 MEEPPVVRSRGRPRKRRREDDATVTGDAKTLPEAKKMMPIALVGRYVLKEFRRNTVLLGKVARYASGLYRVVYESGGFEDLDSSEIRRILLLDSYFDDDLIRRKVELEESVLPKIAAEEPEKGSSELQGELSVENEEERAKTDDDESFGEARDSSSGSEMPETQIPPPLTLPPSSGTIGVPEPCVLNLFSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHVSLMHILKRHLENISPDGSRPATKCLRCSDWSLLDALTWPVFVFQYLAIFGYTKGPEWKGFYDEIFYGEYYLLPASRKLTILQILCDEVLASEELKAEMNMREESEVGINYDNEDSLPAENGPRRVHPRYSKTTACKDAETKKYVSELNAEDDGDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPEGAWYCPECKINLIGPTIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVLNVKSDDFCLKYYNQNDIPRVLQVLYASEQHRPVYNGICMAMLEYWNISENFLPLCVSKLPPMIEEEHKAVSSVKADYSLTFGNGICSDNLVPSLDASLVTTRSPAPGSSGNARTTVNLKLHEETAMDSSVSTNHQSDPKCRNYVNRSAAVSPAKCSLVSSQFSNYGDANDIGLPMNLSLQTKGDQSGFGKCKSSLINDFVYMGCSYKPQSYINYYMHGDFAASAAANLAVLSSEDSRSEGHVSGNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCISCKAPVSSKKGCMLNHAAISATKSAMKILSGFAPVRSGEGIIPSIATYVIYMEESLHGLIVGPFLSEWYRKHWRKQVERAKSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTMQSAACTLGTTQKRATCGRRKKQLSINKVTAGGCQENFAWWHGGKFTKSVFQKAVLPKSMVRKGARQGGLRKISGIFYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFHIRWSDLIRPEHNLQDVKGQDTEASAFRNANIRDKKIAEGKILYRVAFGSQKHLPSRVMKNVEIEQGPEGMEKYWFSETRIPLYLVKEYELRNGKVLSEKEYLHITSHVHKRRLKATYKDIFFYLTCKRDKLDMLSCSVCQLVVLVGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKESCNESPTSPLLLQGQERSTLAVLKGPRPKCDGQGLISTRTKNSRLDMKLVASDFPLETKGRSRSCSWGVIWKKKNNEDTGFDFRLKNILLKGGSGLPQLDPVCRLCHKPYRSDLMYICCETCKHWYHAEAVELEESKLFDVLGFKCCKCRRIKSPVCPYSDLYKMQEGKKLLTRASRKEHFGADSDSGTPIDTRTCEPATPIYPAGDVSRQDNDPLLFSLSSVELITEPQLNADVAGNTVSGPGLLKLPKRGRENNGSFRGNLHAEFSTSNENEMVSKSVKDLSPVEYGSADCNLLNNSEIVKFDALVDFEPNTYFSLTELLHTDDNSQFEEANASGDLGYLKNSCRLGVPGDCGTVNLASNCGSTNSLQGNVNNCRLCSQKELAPDLSCQICGIRIHSHCSPWVESPSRLGSWRCGDCREWR 1613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01706 1613 PANTHER PHD FINGER FAMILY PROTEIN 6 1610 - -
Gma12g01706 1613 Pfam DDT domain 184 238 IPR018501 -
Gma12g01706 1613 MobiDBLite consensus disorder prediction 1 25 - -
Gma12g01706 1613 MobiDBLite consensus disorder prediction 116 174 - -
Gma12g01706 1613 SUPERFAMILY FYVE/PHD zinc finger 378 436 IPR011011 -
Gma12g01706 1613 ProSitePatterns Zinc finger PHD-type signature. 392 433 IPR019786 -
Gma12g01706 1613 SUPERFAMILY FYVE/PHD zinc finger 1288 1346 IPR011011 -
Gma12g01706 1613 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 297 329 IPR028942 -
Gma12g01706 1613 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 6 1610 - -
Gma12g01706 1613 SMART PHD_3 1565 1610 IPR001965 -
Gma12g01706 1613 SMART PHD_3 1292 1340 IPR001965 -
Gma12g01706 1613 SMART PHD_3 1132 1181 IPR001965 -
Gma12g01706 1613 SMART PHD_3 391 434 IPR001965 -
Gma12g01706 1613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1283 1353 IPR013083 -
Gma12g01706 1613 CDD PHD_SF 1292 1339 - -
Gma12g01706 1613 ProSiteProfiles DDT domain profile. 182 242 IPR018501 -
Gma12g01706 1613 Pfam PHD-finger 392 434 IPR019787 -
Gma12g01706 1613 ProSiteProfiles Zinc finger PHD-type profile. 389 436 IPR019787 -
Gma12g01706 1613 MobiDBLite consensus disorder prediction 132 152 - -
Gma12g01706 1613 SMART testlast3 182 242 IPR018501 -
Gma12g01706 1613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 437 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01706 Gma-Chr12 37552801 37560359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01706 272 520 EF-hand Containing Proteins AT5G22760 48.519 9.74e-73 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gma12g01706 DDT 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01706 - - gmx:100808614 3251.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01706 12 37552801 37560359 Gma12g01706 12 37552801 37560359 ECH
Gma13g02845 13 42966056 42973724 Gma12g01706 12 37552801 37560359 GST
Gma12g01706 12 37552801 37560359 Gma12g00750 12 6833951 6842439 PCT
Gma12g00750 12 6833951 6842439 Gma12g01706 12 37552801 37560359 PCT