Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01688 ATGATTTCAAGGGCCACATCTAGCTTTCAAAGTGTTCATCATCAAGGGCTTCAGATGTTCCCTGACGCGGAAGATTTTGTGTCACCCTCTGTGGAATCAGGCTCAGGTACTTCACACTCTAGTTCCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGCTTAGTGAGGTGCAGACCCTGGTAGGTGTTATTCTCTCCCCAAATCAAAGCCTACCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCGTAGTGACTGCCACATCAATGATGTTCACCTGCCAACAGATGGCTCTCACTGCCCCTCCAGGTACTAATAATAATACTAACAAATTGCACCACCACCAGAACAAGTCGTTGCCTCACTCATCAAATATTAATTTTGCCACAAATGGAAGCTGTGTACTTGGTAATAACATAGGAACAGATAATATCAGTGACCATCATGGTTTATTTTCCAGTACTGAGTCAGAGACACTTGACTGGTTTAGTGAAAGCTATAACAATAACGATGATAATAGCAATAGCAATATTATTAGTAAGGTTGCGATCAGTGAAAACAATATTATTACTAGAGGAGGAGGAGGAGGAGGAGTACTGTCTCCAAGGGATGAACCTAATGAAGAAGGGCTTTCACCAAAGATGAATAGTGATGATATAATTATTGAATTAGATGCTGCGAATCTGTTAGCTAAGTACACACACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCACGGGGATGAGTACAAGACCAATGCTGCTTTGAGTAACCCAATTAAGAACCAAAGAGATCTAGAGTGTTTGATGAGTGTGAAGCCAAAGAGGTATTCGTGTCCTCAAGAGGGGTGTAGGTGGAACCAGAGGCATGCCAAGTTCCAGCCACTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGAAGCCACTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTCTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCTGTGCTCGTGTGGCACCTCGTTTTCTAGAAAAGACAAGCTTATGGGTCATGTGGCTTTGTTCGTGGGGCACCAACCAGCTATCAACAACAATGGTCTCTCATATTCGGGAAAATTAATTAGAGCAGCACCACACATTGCAAATGCAGATTGA 1233 0.4404 MISRATSSFQSVHHQGLQMFPDAEDFVSPSVESGSGTSHSSSLLFNLSILKDKLSEVQTLVGVILSPNQSLPESTSMAISSMNSTIQEIVVTATSMMFTCQQMALTAPPGTNNNTNKLHHHQNKSLPHSSNINFATNGSCVLGNNIGTDNISDHHGLFSSTESETLDWFSESYNNNDDNSNSNIISKVAISENNIITRGGGGGGVLSPRDEPNEEGLSPKMNSDDIIIELDAANLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNQRDLECLMSVKPKRYSCPQEGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWLCSCGTSFSRKDKLMGHVALFVGHQPAINNNGLSYSGKLIRAAPHIANAD 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01688 410 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Gma12g01688 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Gma12g01688 410 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 7 391 IPR044300 GO:0010044|GO:0010447
Gma12g01688 410 Gene3D Classic Zinc Finger 224 296 - -
Gma12g01688 410 SUPERFAMILY beta-beta-alpha zinc fingers 239 266 IPR036236 -
Gma12g01688 410 MobiDBLite consensus disorder prediction 201 220 - -
Gma12g01688 410 PANTHER OS08G0562300 PROTEIN 7 391 - -
Gma12g01688 410 SMART c2h2final6 332 354 IPR013087 -
Gma12g01688 410 SMART c2h2final6 294 327 IPR013087 -
Gma12g01688 410 SMART c2h2final6 241 263 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01688 Gma-Chr12 37318898 37320938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01688 26 387 C2H2 Transcription Factor Family AT5G22890 46.684 9.50e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g01688 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01688 - - gmx:100802769 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01688 12 37318898 37320938 Gma12g01688 12 37318898 37320938 ECH
Gma13g02862 13 43126085 43127320 Gma12g01688 12 37318898 37320938 GST
Gma12g01688 12 37318898 37320938 Gma12g00728 12 6548443 6549633 PCT
Gma12g01688 12 37318898 37320938 Gma11g01577 11 16947929 16949161 PCT
Gma12g00728 12 6548443 6549633 Gma12g01688 12 37318898 37320938 PCT
Gma11g01577 11 16947929 16949161 Gma12g01688 12 37318898 37320938 PCT