Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01686 ATGTTGGCACAAATGGACATGGAGGAGCTTGTCTCATGTAACAACAACGATGCCACCAACATAGCCAAAGGGAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCTCCTTGtgctgttgtcgctgctaccactatcaccaccaccaccactgctatcaccgctatcaccaccgtcaTGACATCTAGCTGTTCAAGTGCTTCTGCCGGTGGCGGTGGATCGTCTTCATCCACCACCTTTGAGGAGGAAGAGGAAGACATGGCTAATTGTTTGATTCTCCTAGCACAAGGAAGAGTAGGACGGGACCCTCCTCATCATCACAAGGACCTATGTGGTGATGTCAAGACAGAGAAGGGTAGCACCAAAGTTGATCATTTATATGTTTATGAGTGCAAAACATGCAGCCGAACATTCCCTTCTTTTCAAGCACTAGGTGGCCACAGGGCAAGTCACAAGAAGCCCAAGATGGAGGAGAAAAAGTTGTTATCACCACCACTGTTATTGCCACCACTGCCAGCTTCGTCTTCGTCACTATTTAATTTTGAGGAAGCAAAACAAAGTCACATGAAGAATATTATTAGCCCTTCTGTCTCCCTTCAATTAGGGTGTGGCATTAACAAGGTTGGTTTAAATTTCCATGGCAACAAGTCCAAGATTCATGAGTGTTCCATCTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTAACAATAATAACAATATTGTTCAGACAACAACAACAACAACAACTACTTCTAATGGTGCTGTTGATGTTAAGCCTCGGAATGTTCTAGAGTTGGATCTTAACCTTCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGCGAATCCGAATTCTATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 942 0.4299 MLAQMDMEELVSCNNNDATNIAKGKRTKRRLRPLSPCAVVAATTITTTTTAITAITTVMTSSCSSASAGGGGSSSSTTFEEEEEDMANCLILLAQGRVGRDPPHHHKDLCGDVKTEKGSTKVDHLYVYECKTCSRTFPSFQALGGHRASHKKPKMEEKKLLSPPLLLPPLPASSSSLFNFEEAKQSHMKNIISPSVSLQLGCGINKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRASNNNNNIVQTTTTTTTTSNGAVDVKPRNVLELDLNLPAPEDDLRDSKFQFPANPNSMMLSAAPALVGCHY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01686 313 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Gma12g01686 313 Gene3D Classic Zinc Finger 126 241 - -
Gma12g01686 313 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 313 - -
Gma12g01686 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Gma12g01686 313 SMART c2h2final6 219 241 IPR013087 -
Gma12g01686 313 SMART c2h2final6 128 150 IPR013087 -
Gma12g01686 313 PANTHER ZINC FINGER PROTEIN ZAT5 1 313 - -
Gma12g01686 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Gma12g01686 313 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Gma12g01686 313 SUPERFAMILY beta-beta-alpha zinc fingers 127 241 IPR036236 -
Gma12g01686 313 Pfam C2H2-type zinc finger 127 153 - -
Gma12g01686 313 Pfam C2H2-type zinc finger 219 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01686 Gma-Chr12 37304460 37305861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01686 16 313 C2H2 Transcription Factor Family AT2G28200 42.997 8.91e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g01686 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01686 - - gmx:100788646 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01686 12 37304460 37305861 Gma12g01686 12 37304460 37305861 ECH
Gma12g01686 12 37304460 37305861 Gma03g01708 03 43256452 43257512 ECH
Gma13g02863 13 43134543 43135859 Gma12g01686 12 37304460 37305861 ECH
Gma03g01708 03 43256452 43257512 Gma12g01686 12 37304460 37305861 ECH
Gma19g01758 19 46895445 46896305 Gma12g01686 12 37304460 37305861 ECH
Gma10g00543 10 5590845 5592009 Gma12g01686 12 37304460 37305861 ECH
Gma13g01255 13 26863900 26864766 Gma12g01686 12 37304460 37305861 ECH
Gma13g02863 13 43134543 43135859 Gma12g01686 12 37304460 37305861 GST
Gma12g01686 12 37304460 37305861 Gma12g00726 12 6532347 6533294 PCT
Gma12g01686 12 37304460 37305861 Gma11g01579 11 16967680 16969026 PCT
Gma12g00726 12 6532347 6533294 Gma12g01686 12 37304460 37305861 PCT
Gma11g01579 11 16967680 16969026 Gma12g01686 12 37304460 37305861 PCT