Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01683 ATGGATGTTCACCAAGACACACTGACGTACATGAATGATTTTGAGCTGTACGACTTCGTTGCTGATCCAAATTTTGATCAGTTCATCAATTTGTTCCGAGGGGAGAATGAAGATGCTAACTGTGATCACTTCGGTTCTGACCTTATCAATGATTGTTTTGCTAACAATCAGCAGCAGCTACTTTCATGTCCAGCAAACCCTTTTGATCAGAACAATAATAATAATGCTGTGAATGTCTATGATCCAAGCTCCACATTTAGCTCCTTCTCTTACTATGATAGGGAGCTCAAGGGGGAAGGAGGAGAAGAACTTGATGAAGAACATTCTTCTGGGACGATGACAACGACAACTAACAATGCTGTTGGCAAACCAAAAGTAAAAACTGATATGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCTTCTATAATTGGAGACGCAGCATCATATGTGCATGACCTTCAAGCTCGAGCTAGGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCTTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACTACCCCAAAAATGTGCAAGTGGCCCGTAATATTGGTCATCCAATCTGCAAGAAGATCATGCAGATGGAAATGTTTCAAGTGGAGGAAAGAGGGTACTATGCAAAAATAATGTGCAATAAAGTACAAGGGTTGGCTGCTTCACTGTACAGGGCTCTTGAGTCTCTTGCAGGTTTTAATGTTCAGAACTCAAACTTGGCTACAGTTGATGACAGTTTTCTACTTACATTTACATTGAATGTAAAAGGAACTGAACCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGCTGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTGCTTGA 960 0.4094 MDVHQDTLTYMNDFELYDFVADPNFDQFINLFRGENEDANCDHFGSDLINDCFANNQQQLLSCPANPFDQNNNNNAVNVYDPSSTFSSFSYYDRELKGEGGEELDEEHSSGTMTTTTNNAVGKPKVKTDMSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAASYVHDLQARARKLKAEVAGLEASLLVSENYQGSINYPKNVQVARNIGHPICKKIMQMEMFQVEERGYYAKIMCNKVQGLAASLYRALESLAGFNVQNSNLATVDDSFLLTFTLNVKGTEPEINLPNLKLWVTAALLNQGFEFVASFPA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01683 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 197 IPR036638 GO:0046983
Gma12g01683 319 Gene3D - 124 194 IPR036638 GO:0046983
Gma12g01683 319 Pfam Helix-loop-helix DNA-binding domain 136 178 IPR011598 GO:0046983
Gma12g01683 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 315 - -
Gma12g01683 319 Coils Coil 174 194 - -
Gma12g01683 319 SMART finulus 134 183 IPR011598 GO:0046983
Gma12g01683 319 MobiDBLite consensus disorder prediction 97 124 - -
Gma12g01683 319 MobiDBLite consensus disorder prediction 110 124 - -
Gma12g01683 319 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 315 - -
Gma12g01683 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01683 Gma-Chr12 37273700 37275073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01683 1 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.216 5.20e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g01683 HLH 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01683 - - gmx:100787584 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01683 12 37273700 37275073 Gma12g01683 12 37273700 37275073 ECH
Gma13g02865 13 43159600 43160999 Gma12g01683 12 37273700 37275073 GST
Gma12g01683 12 37273700 37275073 Gma12g00724 12 6506020 6507343 PCT
Gma12g01683 12 37273700 37275073 Gma11g01581 11 16992899 16994526 PCT
Gma12g00724 12 6506020 6507343 Gma12g01683 12 37273700 37275073 PCT
Gma11g01581 11 16992899 16994526 Gma12g01683 12 37273700 37275073 PCT