Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01674 atgggaagagctccttgttgtgacaaggcaaatgtgaagagaggaccatggtcaccagaagaagactcaaagctgaaggattacatagagaagcatggcactggagggaattggattgctcttcctcagaaagctggtctaaagagatgtggaaaaagttgcagattgagatggctgaactatctaaggcctaacattaagcacggggaattctccgatgaggaagacagaatcatttgcagcctttatgctaatattggaagcagGTGGTCAATTATAGCTGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAACTTAAGAGGAAACTCATGGGGTTGCTTCCTTCATCTCATCAAAGAATAGCACCCTATCAACAATTCTCCTCTCAAAACCCTTCATCATTTCCTTCTCACTCATCGCTATCCTCTTCACAATATAGGGACTACTACTACAACTCCTCTCATCATTATTACATCCCAGCACCAACCTCATCTTTCACATGCCTTGAACCAATTTCTGCTCCTTCAAGTAATTACACAAACACAACAACAACCTCCAACTCTCTCTCTTTTTACCAACACCAAGAGCCCTTGGTCAGTGTTAGTCCCAGGCAGTATTACCCCATCACAGACAGTTCCATGCTTGTGTTTGGTAGTGAAACAAGTTGCAGCTCCTCTGATGGAAGCTGCAGTCAGGTTAGCCTTGGCAGAGAGATCAAACAAGAAGACATGGGGTTTCAGAATTTCATGTTTGGAGATCATCAGAACATGAACAAATTCATGAACATTAATCATGATGGAGGTGAAGAATATGTGAACCAATGGACACAGAGGCCAAACGGGTACATTTTTCAGACTCAACAAACAGCATTGGATTATGATCTTGAGGTCATTAAGAACCTAATTTGTAGCAACAGCAGTAGTAATAGTAATAATGGGTACTTGAGTGTTGATGAAAACAAGACGGAGGAGAAGGGTGTGTACTACAACTACTGCAACTGA 1023 0.3079 MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPSSHQRIAPYQQFSSQNPSSFPSHSSLSSSQYRDYYYNSSHHYYIPAPTSSFTCLEPISAPSSNYTNTTTTSNSLSFYQHQEPLVSVSPRQYYPITDSSMLVFGSETSCSSSDGSCSQVSLGREIKQEDMGFQNFMFGDHQNMNKFMNINHDGGEEYVNQWTQRPNGYIFQTQQTALDYDLEVIKNLICSNSSSNSNNGYLSVDENKTEEKGVYYNYCN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01674 340 Gene3D - 69 139 - -
Gma12g01674 340 PANTHER TRANSCRIPTION FACTOR RAX3 1 318 - -
Gma12g01674 340 SMART sant 13 64 IPR001005 -
Gma12g01674 340 SMART sant 67 115 IPR001005 -
Gma12g01674 340 CDD SANT 16 62 IPR001005 -
Gma12g01674 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gma12g01674 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gma12g01674 340 Gene3D - 7 68 - -
Gma12g01674 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma12g01674 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma12g01674 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma12g01674 340 CDD SANT 70 113 IPR001005 -
Gma12g01674 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma12g01674 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma12g01674 340 PANTHER OS09G0431300 PROTEIN 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01674 Gma-Chr12 37115036 37116892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01674 1 119 MYB Transcription Factor Family AT5G57620 89.916 1.41e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g01674 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01674 K09422 - gmx:100796382 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01674 12 37115036 37116892 Gma12g01674 12 37115036 37116892 ECH
Gma13g02873 13 43249299 43250920 Gma12g01674 12 37115036 37116892 GST
Gma12g01674 12 37115036 37116892 Gma12g00711 12 6338281 6340505 PCT
Gma12g01674 12 37115036 37116892 Gma11g01595 11 17169545 17171154 PCT
Gma12g00711 12 6338281 6340505 Gma12g01674 12 37115036 37116892 PCT
Gma11g01595 11 17169545 17171154 Gma12g01674 12 37115036 37116892 PCT