Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01661 ATGAGCAATTTAAGGCCTGAATCTCATGTAGCACAGCAAATTCGGCGTGAAAAATTGCGAATCCAGAACAGTTCTCAGCCTTCACACGAATTCCCTAACAATCTTGAACAGTTATCTTTACACCCGGCGGGGGGGTTTAATAACTTGGACCTTCTTCAAGTTAGGAGTGTTAGAAATGCTAACATCCTTGATGGGCTAGCTGTTTATTCATCAGAAATGCCAAACTTTTCTACCTCTTCGTCGAATCCTAATTTGTCTGATGCAAGGAACGCGTTGGAGTATCACCAAGAACAAGGTGCAGCAGCTGAACCGAGTAATAGGCTGATGATGAATCAATATGGTTCATTTCCCCATTCCATGTCTGCAATTCATTCTTCCCATAAAGAACACTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTGCCCCCCATCAGGGGTCTGATTGGTTTGTGAATTATGCAAGCAATGCCAATTCTTTTTTGTCTGCTGACCTCAACAACAACGTGTCTGCTTACAACGAACTTATGGATGTACACTGTAGCAATGCATCTGGTGAAATCAGTGGTAGAGAAATTCAGAAGCAATTAGGTGTACTGCATAATAATCCTCCTCCTTCTCCGCTTTATCAGAATGCTTTGCAAGATATTGTGAAGTCTGCTTCTTTCAGTTCTCACACTAGGCAAGACATGTCTTCACTGATGCAACAAAATGACCACAGTATTTGGGTGGGGAATGCTGGTGAAGCTGAGCCTCAACAACCAAGTTATGAAAACCAGCCAAATCAGTTGCATTTTGGGTGGACAAATCGAACAATTGCTAATACCCTGAGTGATTCAACTCCTCAGAGCTTATCCTTGTCACTTTCATCAAATGCACAACCCAAACCTTCTGTTTCTCACCTTGAACAAGGGTCTGCATCAGATGATCCTCAATGTTTGACGAATATGAAATCTATTGTAAAACCATCTATTGTTTCTAGAGATATTGGGAAATCAGTTCAAGAAACGGTGGGAATGCCTTCAAAGAGTACTATTACTTATCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATCCTTAAGAGTTCAAGGTTCTTAAAGTCTGCCCAACAATTGTTAGATGAAATTTGCTGTCTATCTGGTGCAAAATTTGCGAAATCATATGATGTTTCCAAGAGGGTTTCTCCAGAAGTTAGTGCCTCTACTTCTGCTGATACTGTTACTGGGGTTGCTGCAAAAGGTAGTAACTCAGGTTCTTCATCATCTATTTTGTATAGTGTTTCAAAGGAAAATAGGGCTGATCCAGGAGTTAGAAGTAGCTTTGGTCTTTCCTCGAGGCCAGATTATCAACATAAGAAAGCAAAGCTACTGTACATGCAAGAGGAGGTTACCCGGCAGTGCAAACAGTACCATCTACAAATGCAAATGGTTGTTTCATCGTTCGAGTCAGTGGCGGGTCTTGGTTCTGCTACTCCTTACATCCCCATGGCTCTCAAATCAGTATCAAAACACTTCAGGTGCTTTAAAAATTCTATCTCAGAACAGCTCAAGCTTATAAGTGAGGCCTTGGGAGAGGATTTGTCCAAACCCTCCAACACCAGTACTTGTAGTAATAAAGCTGACACTACTACTACTAAGGCAAGGATAAGATGCAGCATCGACCAAAGCTTTCTGAAGAACAAATCTGTAAAGGGTACCACGGAACTTCTTGAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTGGCTAGTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATACACACGCTTGAAACAAAAGCAACAAGCTCCAAGGGCAATTGTGGTAAAAACGAGGGAACTTCTTCTGGCACTGAAGGTGATACCAGCAACCCTAGAGCTTTGAGCAATATTGGTATGAATTCAATACCTGAAAACCAATTTCAGGGTATGGATATGGGATCATCCATTATTGCTGCAAATGCTGAGGAAAGTGGGTTAAATTCAGAACAATGGAGTCAAGAGAAGAGGTCTAAGTTGGAATGCCAAATGACTACTTCAAACATGGATGGAACACTGATGGGTTTTGTGCCATACCGACGCGGCGGTGGCATAGAGGTTGGTGGGCTAGGGTCTGTGTCACTAACATTGGGTCTTAGGCATGGTGTTGAAGGTGTACAGCACCAACAACAATTGCAAGAGGAGCAACTTAGACATCACCTTGGAGGGCACATGATCCATGACTTTGTGGGCTGA 2385 0.4298 MSNLRPESHVAQQIRREKLRIQNSSQPSHEFPNNLEQLSLHPAGGFNNLDLLQVRSVRNANILDGLAVYSSEMPNFSTSSSNPNLSDARNALEYHQEQGAAAEPSNRLMMNQYGSFPHSMSAIHSSHKEHCELRNLGNWRNSAPHQGSDWFVNYASNANSFLSADLNNNVSAYNELMDVHCSNASGEISGREIQKQLGVLHNNPPPSPLYQNALQDIVKSASFSSHTRQDMSSLMQQNDHSIWVGNAGEAEPQQPSYENQPNQLHFGWTNRTIANTLSDSTPQSLSLSLSSNAQPKPSVSHLEQGSASDDPQCLTNMKSIVKPSIVSRDIGKSVQETVGMPSKSTITYRSVGPLGPFTGYATILKSSRFLKSAQQLLDEICCLSGAKFAKSYDVSKRVSPEVSASTSADTVTGVAAKGSNSGSSSSILYSVSKENRADPGVRSSFGLSSRPDYQHKKAKLLYMQEEVTRQCKQYHLQMQMVVSSFESVAGLGSATPYIPMALKSVSKHFRCFKNSISEQLKLISEALGEDLSKPSNTSTCSNKADTTTTKARIRCSIDQSFLKNKSVKGTTELLEQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHTLETKATSSKGNCGKNEGTSSGTEGDTSNPRALSNIGMNSIPENQFQGMDMGSSIIAANAEESGLNSEQWSQEKRSKLECQMTTSNMDGTLMGFVPYRRGGGIEVGGLGSVSLTLGLRHGVEGVQHQQQLQEEQLRHHLGGHMIHDFVG 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01661 794 ProSiteProfiles 'Homeobox' domain profile. 576 639 IPR001356 GO:0003677
Gma12g01661 794 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 30 766 - -
Gma12g01661 794 Pfam Homeobox KN domain 596 635 IPR008422 GO:0003677|GO:0006355
Gma12g01661 794 SUPERFAMILY Homeodomain-like 581 646 IPR009057 -
Gma12g01661 794 Pfam Associated with HOX 363 517 IPR006563 -
Gma12g01661 794 SMART prehox3 358 518 IPR006563 -
Gma12g01661 794 SMART HOX_1 579 643 IPR001356 GO:0003677
Gma12g01661 794 MobiDBLite consensus disorder prediction 650 678 - -
Gma12g01661 794 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 766 - -
Gma12g01661 794 MobiDBLite consensus disorder prediction 277 311 - -
Gma12g01661 794 CDD homeodomain 579 640 IPR001356 GO:0003677
Gma12g01661 794 Gene3D - 582 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01661 Gma-Chr12 36849248 36855129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01661 282 649 Homeobox Transcription Factor Family AT5G02030 41.489 3.18e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma12g01661 POX 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01661 - - gmx:100790583 1508.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01661 12 36849248 36855129 Gma12g01661 12 36849248 36855129 ECH
Gma13g02884 13 43408623 43414486 Gma12g01661 12 36849248 36855129 GST
Gma12g01661 12 36849248 36855129 Gma12g00691 12 6123907 6129774 PCT
Gma12g01661 12 36849248 36855129 Gma11g01618 11 17441872 17447527 PCT
Gma12g00691 12 6123907 6129774 Gma12g01661 12 36849248 36855129 PCT
Gma11g01618 11 17441872 17447527 Gma12g01661 12 36849248 36855129 PCT